Ictalurus punctatus (channel catfish): 108269258 Help Entry 108269258         CDS       T04658                                  Name (RefSeq) THO complex subunit 3   KO K12880   THO complex subunit 3 Organism ipu  Ictalurus punctatus (channel catfish) Pathway ipu03013   Nucleocytoplasmic transport ipu03040   Spliceosome Brite KEGG Orthology (KO) [BR:ipu00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     108269258   09122 Translation    03013 Nucleocytoplasmic transport     108269258  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:ipu03019]     108269258    03041 Spliceosome [BR:ipu03041]     108269258 Messenger RNA biogenesis [BR:ipu03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     TREX complex      108269258 Spliceosome [BR:ipu03041]  Complex C   Other components    EJC/TREX     108269258  Other splicing related proteins   Spliceosome associated proteins (SAPs)    TREX complex     108269258 SSDB OrthologParalogGFIT Motif Pfam:  Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40_CDC20-Fz WD40 Beta-prop_WDR3_1st WD40_Prp19 Beta-prop_EML_2 WD40_WDHD1_1st WDR55 ANAPC4_WD40 Beta-prop_Aladin Beta-prop_WDR36-Utp21_2nd EIF3I Beta-prop_CAF1B_HIR1 WD40_Gbeta Beta-prop_WDR3_2nd Beta-prop_WDR19_1st Beta-prop_RIG_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd Beta-prop_IFT140_1st WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_Vps41 DSE1_N Beta-prop_WDR36-Utp21_1st Beta-prop_NOL10_N eIF2A WD40_RFWD3 Beta-prop_WDR35_TULP_N RMC1_N Beta-prop_TEP1_C NBCH_WD40 Beta-prop_HPS5 WD40_MABP1-WDR62_1st WDR90_beta-prop_4th Tricorn_2nd Beta-prop_ACSF4 TRM82_WD PD40 B-prop_COPA_B_2nd Beta-prop_NUP159_NUP214 Beta-prop_SPT8 Beta-prop_WDR75_1st PAC11 Beta-prop_EIPR1 Beta-prop_WDR41 Peptidase_S9_N ASA1 Beta-prop_NWD2_C Beta-prop_Nup120_160 WD_LRWD1 PROPPIN Beta-prop_WDR11_1st Cytochrom_D1 Beta-prop_ELP1_1st Beta-prop_DCAF4 YNCE Motif Other DBs NCBI-GeneID:  108269258 NCBI-ProteinID:  XP_017330507 Ensembl:  ENSIPUG00000001292 UniProt:  A0A2D0RJ09 W5U691 LinkDB All DBs Position 8:complement(14801850..14806435) Genome browser AA seq 322 aa AA seqDB search MASSYYHEMHENFKNNSKSREFPAHSAKVHSVAWSCDGKRLASGSFDKTASVFVLEKDRL VKENNYRGHGDSVDQLCWHPTNPDLFVTASGDKTIRIWDVRTTKCMATVSTKGENINICW SPDGQTIAVGNKDDVVTFIDAKTHRPRAEEQFKFEVNEISWNNDNDMFFLTNGNGCINIL SYPELKLIQSINAHPSNCICIKFDPTGKYFATGSADALVSLWDVEELVCVRCFSRLDWPV RTLSFSHDGKMLASASEDHFIDIAEVETGEKLWEVQCESPTFTVAWHPKRPLLAYACDDK EGKYDSNREAGTVKLFGLPNDS NT seq 969 nt NT seq  +upstreamnt  +downstreamnt atggcgtcttcctattatcatgaaatgcacgagaatttcaaaaacaacagcaaaagtcgt gagtttccagcacatagtgcgaaagttcactctgtcgcctggagctgtgatggaaaaaga ctggcttcaggttcattcgacaaaactgccagtgtttttgtcctcgaaaaagaccgcctg gtgaaggagaataactacagaggacatggagacagtgttgatcagctgtgttggcaccca accaacccagatctgttcgtcactgcatcaggagacaaaaccatccggatctgggatgtc cgaactactaaatgcatggccacggtcagcacgaaaggagagaacatcaacatatgttgg agtcctgatggtcagacaatcgctgttgggaataaggatgatgtggtgactttcattgat gcaaagactcaccgtccacgtgctgaagagcagttcaaatttgaggtcaacgagatttcc tggaacaatgacaatgatatgttctttttgacaaatggcaatggttgcatcaacattttg agctatcctgagctgaagcttatccaatcaattaatgcccatccatccaactgtatctgt atcaaatttgatcccactggaaaatattttgctactggaagtgcagatgccttggttagt ctgtgggatgtcgaggagctggtgtgtgttcgctgtttttctaggttagactggccagtg agaaccctgagtttcagtcatgatggcaaaatgttggcatcagcctctgaagatcacttt attgacattgctgaagtagagacaggggagaagctttgggaagtgcagtgcgagtctcca accttcactgtagcctggcacccaaaaaggccactgctggcctacgcctgtgatgataag gagggcaaatacgacagcaatcgggaggcagggactgtgaaactctttggccttcctaat gactcataa

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