Ictalurus punctatus (channel catfish): 108269263
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Entry
108269263 CDS
T04658
Name
(RefSeq) transcription factor Sox-3 isoform X1
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ipu03000
]
108269263
Transcription factors [BR:
ipu03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
108269263
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GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
108269263
NCBI-ProteinID:
XP_017330512
UniProt:
W5UFA9
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Position
8:complement(12407677..12409889)
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AA seq
304 aa
AA seq
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MYNMMETELKSPLPPQSTVGSGPGGKSGGGSDQDRVKRPMNAFMVWSRGQRRKMAQENPK
MHNSEISKRLGADWKLLTDAEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKTKTLLKKDKY
SLPGGLLAPGAGAVNSAVSVGHQRMDSYAHVANGWTNGAYSLVQEQLAYPQHHGMSSPPP
LQQMHRYDMTAGLQYPMMSTAQTYMSAASTYSGVSYAQQSPGAVGLGSVASVCKTEPSSP
PPAIASHSQRACLGDLRDMISMYLPPGGDSADHNALQSSRLHSVHPHYQSAGTGVNGTLP
LTHI
NT seq
915 nt
NT seq
+upstream
nt +downstream
nt
atgtataacatgatggaaaccgagttaaaaagtccgctgcctccgcagtccaccgtgggc
tcgggaccgggcgggaagagcggcggcgggagcgaccaagaccgcgtgaagcggccgatg
aacgcgttcatggtgtggtcgcgcggccagcgcaggaagatggctcaggagaaccccaag
atgcacaactccgagatcagcaagcgcctgggtgcagactggaagctgctcaccgacgct
gaaaagcggccgtttatcgacgaggcgaagcgcctgcgtgccatgcacatgaaggagcac
ccggattacaaataccggccgcggcgcaagaccaagaccctgttgaaaaaagacaagtac
tcactacccggcggcctcttggctcctggcgcgggcgcagttaacagcgctgtgtccgtg
ggccaccagcgcatggacagctacgcacacgtggccaacggctggacgaacggcgcgtac
tcgctggttcaggaacagttggcctacccgcagcaccacggtatgagcagcccaccgcct
ctgcaacagatgcaccgctatgacatgacggcgggtctgcagtacccaatgatgtccaca
gcgcagacatacatgagcgcggcgtccacgtacagcggcgtgtcgtacgcgcagcagagc
ccgggcgccgtgggcctcggctccgtggcctccgtgtgtaagaccgagcccagctcgcct
ccgcctgccatcgcctcacactcacagcgcgcctgcctcggagacctgagggacatgatc
agcatgtacctgccacccggaggagacagcgccgatcacaacgcactgcagagcagccgc
ttacacagcgtacatccacactaccagagcgcggggaccggggtgaacgggacactgccc
ctaacccacatttaa
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