Ictalurus punctatus (channel catfish): 108269478
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Entry
108269478 CDS
T04658
Symbol
dhx32b
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX32
KO
K18994
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX32 [EC:
5.6.2.6
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ipu03041
]
108269478 (dhx32b)
Enzymes [BR:
ipu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108269478 (dhx32b)
Spliceosome [BR:
ipu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
108269478 (dhx32b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Motif
Other DBs
NCBI-GeneID:
108269478
NCBI-ProteinID:
XP_017330880
Ensembl:
ENSIPUG00000020469
UniProt:
W5UI49
LinkDB
All DBs
Position
9:complement(10801194..10822463)
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AA seq
733 aa
AA seq
DB search
MARGEIKALDMEGTADMAVDQDLGCDDVLEFNQFDGLPFSSRYYNLLKERKALPVWGAKC
EFMDYITNSQLVIVSGTAKTGQSTQIPQWCAEFCLSVQYRHGMVVCTQIRRQSTVDLALR
VADEMDVNIGHEVGYVIPFQNCCSTDTVLRYCTDHMLLSEMMSDPLLEQYGVVLIDQAQE
RTVSTDLLLGLLKDVLLARPELRLVILTAPQSSDKLLRHYGNVPLIQLEAERPSEMVYGT
GRGGVKDYLYASLQLAMEIHQSQEHGDIVVFLATEQEIECARAILRREGAGVASSLGELI
PVSVCPEQEHSLPVLTEPEGRCRRVFLTCGPTEDLFWAMHSIRFIIDAGVQKRYVYNPRI
RASSIVIQPISKSQAECRKQLIGPTGKCFCLYLENTSLPTENVPHILESDITSTVLFLKR
MEIAGLGHCDFIDRPDPEGLMQALEELDYLAALDNDGNLSEIGIIMSEFPLEPQMAKTLL
ASCEFDCVSEVLTIAAMLTAPSCFLVPPVEFKQQALKCHQRFHHTVGDHFTLVNVYNAYK
HSQHSSNCSIERWCDEHFLSLSALQMADAVRAELTEILKRLELPVSCSAFGSKTNTLNIK
LALLAGFFMQVARDIDGTGNYFILTHKHVAQIHPLSVYGAESPKQNLPEWVLYHEHTLSE
NNCIRTVTQISTHELIQMTPQYFFYNLPSSESKDILQYVIKHGSAAPGQDKSKAPTLNNI
ASEEHSYERCVIQ
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgtggagaaattaaggcgctagatatggagggaactgcggacatggctgtagat
caggacttgggctgtgatgatgttctcgagttcaaccagttcgacggtcttcccttttcc
tcacggtattataacctactaaaggagaggaaagctcttccagtttggggagctaagtgc
gagttcatggactacatcaccaacagccagcttgttattgttagtggcactgcgaaaact
ggacaaagcactcagatcccacagtggtgtgcagagttctgcctgtctgtgcagtacagg
cacggcatggtggtgtgcactcagatccgccgacagagcacagtggatctcgccctgcgt
gtggccgatgaaatggatgtgaacattggccatgaagtaggatacgtcatccctttccaa
aactgctgctccaccgacactgtgcttaggtactgcactgatcacatgctgcttagtgag
atgatgtccgaccctctgttggagcagtatggtgtggtgttgatcgatcaggctcaggag
cgcacggtcagcacagacctcctactcggcctgcttaaagatgtgctgctggcgcggcct
gagctgcgtctggtcatcctcactgcacctcaatcctccgacaagcttctacgccactac
ggaaacgtgcccctgatccagcttgaggcagaacgaccttctgaaatggtgtatggcact
gggaggggaggtgtcaaagactatttgtatgcctctctccagctggctatggaaatccac
cagtctcaagagcatggagatattgtagtgtttctggctactgaacaagagattgaatgt
gctcgtgccatcttgcggagggaaggggctggtgtagcttcatcactaggtgagcttatt
cccgtgtcagtctgtccagagcaggagcacagtctgcctgtacttacagaaccggagggc
aggtgcaggagggtcttcctcacgtgcggtccaactgaagacttattctgggccatgcat
agcattcgctttatcattgatgctggagtacaaaagagatatgtgtacaaccctcgaatc
agagccagctctattgttattcaaccaatcagcaaaagccaagctgaatgccgcaaacaa
ctgattggtccaacagggaagtgtttctgtttgtacctggagaacacgtcccttcccact
gagaatgtgcctcacatcctggagtcagacatcacttccacggtgcttttccttaagagg
atggaaatcgctgggttgggtcactgtgatttcattgataggccagatcctgagggcctc
atgcaggctttagaagaactggactacctggcggctctggataacgatggtaatctgtct
gagattggaataattatgtctgaatttcctctggagccccagatggctaaaactcttctg
gcttcctgtgaatttgactgtgtgagtgaggtgctcacaattgctgccatgcttacagct
ccaagttgtttcctggtccctcctgtggagttcaaacagcaggccttaaagtgccatcag
aggttccatcacacagtaggagaccacttcaccctagtcaatgtgtacaatgcctacaaa
cacagccagcacagctcaaattgcagcatcgagcgctggtgtgacgagcatttcctgagt
ttaagtgcccttcagatggccgatgcagttcgagcagagctcactgagatcctgaaacgt
ttagagctgccagtgtcatgttcagcctttggctcaaagacaaacacactgaacatcaaa
ctggctctgttggctggcttcttcatgcaggtggccagggacattgatgggacagggaat
tacttcattcttacccacaagcatgttgctcagatccatcctctctctgtctatggagct
gagtcgcccaagcagaaccttcctgagtgggttttgtatcatgagcacacactgtctgag
aataactgcatcagaaccgtcacccagatttcaacacatgagctcatccagatgactcct
cagtatttcttctacaacctgccttctagtgagagtaaagacatactgcagtatgttata
aagcatggctcagcagcaccgggtcaggacaagagcaaagcaccgaccctcaacaacatc
gccagtgaagaacattcctatgaacgctgtgtcatacagtaa
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