Ictalurus punctatus (channel catfish): 108269711
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Entry
108269711 CDS
T04658
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM39
Organism
ipu
Ictalurus punctatus (channel catfish)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SPRY
PRY
zf-RING_UBOX
zf-B_box
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_4
zf-C3HC4_3
zf-RING_2
zf-RING_5
U-box
Prok-RING_4
TRAF3_RING
zf-RING_6
DUF4988
zf-Nse
Y1_Tnp
Borrelia_P83
Motif
Other DBs
NCBI-GeneID:
108269711
NCBI-ProteinID:
XP_017331177
Ensembl:
ENSIPUG00000011170
UniProt:
A0A2D0RKY6
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Position
9:complement(3296837..3304088)
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AA seq
547 aa
AA seq
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MDTPTEFAGESSSLLTEEQLQCSICLEVFTDPVTTTCGHNFCNSCLTQSWDTRQHYYCPY
CKEKFTKRPEIKINITLREVADHFKKKTVSDKSQVLCDFCTDVKQEALKSCLDCGVTLCS
SHLESHNNVPKYKKHKVINAVGNLEKYICQEHERPLELFCRDDQKCVCQFCTVTDHKNHN
VIPLEEESGQRKSQLGKTQTELQQMIQERLKKIQEINHSVELSKRNTEKEKSDSIEVFTA
LIRSIERSQAELLEVMEEKQKAAEKQAEGLIKELEEEIDELKRRDTELEQLSHTDDHLHL
LQIYPSLCIAPHTKNWTEIRINTELSVEALRTALSQLQKTLNEKLSVTLNEKLKEKVSTE
LKRIQQYAVDVTLDTDTANLYLILSDDGKQVTCGDTKQNLPDTPKRFTFYANVLGKQGFS
SGRFYYEVQVSGKTEWSLGVVRESVNRKGKFETFKPQDGFWTVVLRNGNEYTARDDPCIS
LSLREKPQKVGVFVVYDEGLVSFYDIEVMSHIYSFTGQSFTEKLYPYFSPCLNDGGKNSA
PLIISRA
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atggatacacctactgaatttgcaggtgaatcaagcagcctcctgactgaagagcagtta
cagtgttctatctgtctggaagtgttcaccgatccagtcaccactacatgtggacacaac
ttctgcaacagctgcctcacacaaagctgggatacacgtcaacattattattgtccatat
tgcaaagagaaattcaccaagagacctgaaatcaagattaatataacactgagagaggtt
gcagatcacttcaagaagaaaacagtctcagataagtctcaggttctttgtgacttctgc
actgatgtgaagcaggaggccttgaaatcctgtctggattgtggtgtgactctctgttca
tctcatttagagtctcataataatgttccaaaatataagaaacacaaagtaataaatgca
gtggggaacctggagaaatacatttgccaggagcatgagagacctctggagctcttctgt
agagacgatcagaagtgtgtgtgtcagttctgtactgtgacagaccacaagaatcacaac
gtaattccattggaggaggagagtggacagaggaagagtcagctggggaaaacacagacg
gagctgcagcagatgatccaggagcgactgaagaagatccaggagattaatcactcagta
gagctcagcaaaagaaacacagagaaggagaaatcagacagtattgaagtcttcacagct
ctgattcgctccattgagaggagtcaggctgagctgctggaggtgatggaggagaagcag
aaagcagcagagaagcaggctgaaggactcattaaagagctggaagaggaaatcgatgag
ctaaagaggagagacactgagctggagcagctctcacacactgacgatcatctccacctc
ctacagatttatccgtcactgtgcatcgctccacacaccaagaactggactgagatcagg
attaacacggaactgagtgtggaagctctgaggacggctctgtctcagcttcagaagact
ctgaatgagaaactcagtgtaactctgaatgagaagctgaaggaaaaagtctccacagaa
ctgaagaggattcagcagtatgcagtggatgtgactctggatactgatacagctaatctc
tatctcatcctgtctgatgatggaaaacaagtgacgtgtggagacacaaagcagaatctc
ccagacaccccgaaaagattcactttttatgcaaatgtcctgggaaaacagggtttctcc
tcagggagattttactatgaggtgcaggtcagtgggaagactgagtggagtttaggagtg
gtcagagagtctgttaacaggaaggggaaatttgagacatttaaacctcaggatggattc
tggaccgtggttctgaggaacgggaatgagtatactgctcgtgatgatccctgtatctcc
ctctccctgagagagaaaccccagaaggtgggcgtgtttgtggtttatgatgagggtctg
gtctccttttatgacatcgaggtcatgtctcatatctactctttcactggtcagtctttc
actgagaaactctatccatacttcagtccttgtttgaatgatggaggtaaaaactcagca
ccactgatcatctctcgtgcgtaa
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