Ictalurus punctatus (channel catfish): 108269826
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Entry
108269826 CDS
T04658
Name
(RefSeq) SR-related and CTD-associated factor 8 isoform X1
KO
K13191
RNA-binding protein 16
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ipu03021
]
108269826
03041 Spliceosome [BR:
ipu03041
]
108269826
Transcription machinery [BR:
ipu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
108269826
Spliceosome [BR:
ipu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
108269826
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
108269826
NCBI-ProteinID:
XP_017331386
UniProt:
A0A2D0RMK9
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All DBs
Position
9:3102382..3127113
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AA seq
1271 aa
AA seq
DB search
MEAVKAFNGELYSLNEYKPPISKAKMTQITKSAIKAIKFYKHVVQSVEKFIQKCKPEYKV
PGLYVIDSIVRQSRHQFGQEKDVFAPRFSKNIISTFQNLYRCPSDDKSKIVRVLNLWQKN
SVFKSDIIQPLLDMAAGLPPPSVTPVPASTAVPVNNATPGTPATPATPANIVPSLPDWAS
QISNSDTVAAVAQILQSPQGQQLQQLVQSLQLQQQKPQPSLLQALDAGLVVQLQALTAQL
TAAAAANTLNPLEQRVSSFNKKLLGQFDFGGESETGEDSKKDTAAPQLPMVSESINNSLF
HQLAEQLQQQNLEQFQKQILEHQQHQQKSMAMENQESIFGPENSAPPAQSNVQPQLQEQE
TKLDDSIDNQQQDMDLDEGQDTVDEDAFESEEKKTSGTRSRTHSRSRSRSPKRRRSRSRS
GSRKRKHRKRSRSRSRERKRTKSSRSYSSERRAREREKERQKKGLPPIRSKFLSVCSTTL
WVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYICMVHRQDAYRARQKLSTGSYKI
GSKVIKIAWALNKGVKQEYKQFWDVDLGVTYIPWEKVKVDDLDGFAEGGMIDQETVNSEW
EAQKNTEGTPKEPQVQPAAAESSVPSTSQNETFTQPVAMMPVQIPVAQTVPAVSLVPPAF
PVTMTMPPPGFGPPPPFLRAGFNTSQPPPGFMAASSVAQSAIGAGLASAQTPLVQPTQDG
NKEQTFGAMLPPTSTIPASFMPSGMPGAVFNPVGAQAQQASADKTAVSAESLDAPNEITL
HGLQNAVRSGMGLLGMHPSASLAHPLSGQRMPGLLPIDLRPNLLQGAGARFPMLMQQGLA
QQANSLLDASSLQVRARTPFPQMEHFNRADGPFARAPNPTAPAPDNMDKANNNNNNNAPT
TSDGGGQQEGDQDYRFPPPEKQSTGLLRTPPPEMRTEPTPVRTPLLERPPRGGVHMEGPG
RREPAPGPFRAETRWGAPRGDLDERDMRGMPAGPPKSFQEDRGNPNFQNRFEMRGGGAMG
GVGPGWNRGGGGGGGGGGGGGGGGGGPFNANSHQDFDDRRRPWERQKDRDDRDFRREMND
NRHRERDRERGRDRNRERERDREWDNDKERDRERGGWAPPTSQPLLPLPRPSQPLLPLPT
PLLNLPPSQPESHPKPVLHEPRQAEPQPEAKPPLQPQPDRESAGGQDNKGTFSDSVHDLD
SKPETDSEPTAEPSRPSPPAPTAKPLNDTQAPEVSASPLVAAGGGGGQTAPKEEAETGTE
PELVKTDTEET
NT seq
3816 nt
NT seq
+upstream
nt +downstream
nt
atggaggctgttaaagcgtttaacggcgagctgtactctctgaatgaatacaagcctccg
atctccaaagcgaagatgacccagatcaccaagtcagccattaaagcgataaagttctac
aaacatgtggtccaaagcgtggagaagttcattcagaagtgcaagcctgagtacaaggtc
cccggtctgtacgtcatcgactcgatcgtgcgtcagtcgcggcaccagttcggccaggag
aaggacgtgttcgctccacgcttcagcaagaacatcatcagcactttccagaacctctac
agatgcccctctgatgataagagcaagatcgtccgtgtcctcaacctgtggcagaaaaac
agcgtgttcaaaagtgacatcatccagccgttactggacatggcagcgggactcccgccc
ccgagcgtcacacccgttcccgccagcaccgcggttcctgttaacaatgccactcctggc
actcctgctactccggccactccggccaacatcgtgcccagtttaccggactgggcctct
cagatctccaactcggacaccgtggcagctgtagcgcagatcctacagagccctcaagga
cagcagttgcagcagttggtgcagagtttgcagttgcagcagcagaagcctcagccgtct
ctcctgcaggcgttagacgcaggtctggtggtccaactgcaggccctgaccgctcagctc
acagcggccgcagcagccaacacgctcaacccgctcgagcagagagtctcctccttcaac
aagaagctcttgggacagttcgacttcggcggcgagtccgaaaccggcgaagattccaaa
aaggacacggcggcacctcagttgcccatggtttcagagtccattaacaactccctcttc
catcagttggctgagcagctccagcagcagaacctcgaacagtttcagaaacaaattcta
gagcatcaacagcatcagcagaagtccatggccatggagaaccaggagagcatcttcggt
ccggagaactcggcccctccagcacagagcaacgtccaaccgcagctccaagagcaggaa
accaaactggatgattctattgacaaccaacaacaggacatggacctggacgagggacag
gacactgtagacgaggatgcgttcgagtcggaggagaagaaaaccagcggtactcgttcc
agaacacactctcggtctcgctccaggtccccaaagaggaggaggtcaaggtcacgctca
gggtcccggaagcgcaaacaccggaaacggtcgcgctcgcgctccagagaacggaagaga
acgaaatcctctcgttcctactccagcgagcgacgagcacgggagagagagaaggagcgg
cagaagaaaggccttcctccaatccgctccaaatttctcagcgtctgtagcaccacgttg
tgggtgggccaagtggacaagaaggccacacagcaagacctcaccaacctttttgaggag
tttggccagatcgaatccatcaacatgattcctcccagaggatgtgcttacatctgcatg
gtgcatcgtcaggacgcttatcgcgcaagacagaaattaagcaccggctcgtataaaatc
gggtccaaggttataaagattgcctgggctcttaataagggtgtgaaacaggagtacaaa
cagttctgggacgtggatctaggagtgacctacatcccctgggagaaggtcaaggtggac
gacctggacggctttgcggaaggaggcatgatcgaccaggaaacagtcaacagtgaatgg
gaagctcagaagaacacagaaggaacacctaaggaaccccaggttcagccggcggctgcc
gagagcagcgtgccgagcacgtcacagaacgaaaccttcacgcagccggtcgccatgatg
cccgtacagatcccagtggcgcagaccgtccctgctgtcagcctggtcccgcccgcattt
ccggtcaccatgacgatgcccccaccaggtttcggtcccccgcccccatttctcagggct
ggattcaacacctcgcagcctcctccaggtttcatggccgcttccagtgttgctcagtct
gccatcggagctggtctcgcctccgcccaaacacctttggtacaaccgactcaagacggc
aacaaggagcagacgtttggagcgatgctccctccgacgagcactattccggcaagcttc
atgccctcgggaatgcctggagcggtgttcaaccctgtgggagcgcaagcacagcaggcc
agcgctgacaaaacagctgtgtctgcagagagcttagacgcacctaacgaaataacacta
cacggacttcagaacgcagtacgcagtgggatgggtttactgggcatgcacccttccgca
tctctcgctcaccctctctctggacagaggatgcctgggctgctgcccatcgacttgcgt
cccaacctcctccagggagccggggctcgtttccccatgctcatgcagcaaggcctggcg
caacaagccaacagcctcctggacgcctcctcgcttcaggtccgtgcccgcacccctttc
cctcagatggagcactttaatcgtgcagacggtcccttcgcgagggcccccaatcccaca
gctcctgccccagacaacatggacaaagctaataataataataacaataacgcaccgact
acttcagatggcggaggtcaacaagagggcgatcaggactatcgcttcccgcctccggag
aaacagagcacgggtctgctgaggacccctcctcctgaaatgaggacggagccaacccct
gtcagaactccactgctggagagacctcccagaggaggcgtgcacatggagggacccggg
agacgggagcccgcgccaggccctttcagagccgagacgcgctggggcgcaccgcgcggg
gacttggacgagcgagatatgagaggaatgccagcaggaccacccaagagctttcaggag
gatcgcgggaatccgaatttccaaaaccgtttcgagatgcgaggcggaggagccatgggt
ggagtagggccgggctggaatcgtggaggaggaggaggaggaggaggaggaggtggtggt
ggaggaggaggaggaggtcctttcaatgccaactctcatcaggactttgacgatcggcgt
cggccttgggagaggcagaaggaccgcgacgacagggacttccgcagggaaatgaatgac
aaccggcacagggagcgagaccgcgaacgagggcgagatcggaatcgggagcgagagaga
gacagagaatgggataacgataaggaaagagacagggagcgcggcggctgggcgcctcct
acttcgcaacctctcctccctcttcccagaccatcccaaccactgcttcctctacccaca
cctctgctaaacctgcctccgtctcagcccgagtcgcatcctaaacctgtcctgcacgag
ccgagacaagccgaaccacagccggaagcgaagccgcccctgcagccgcagcctgacaga
gagagtgcaggcggccaggacaacaaaggcacctttagtgacagtgttcacgacctggac
tctaaacccgaaaccgactcggaacccacagccgagccgtctcgcccctccccgcccgct
cccacagccaagcccctaaacgatacgcaagccccggaagtttccgcttccccgctcgtg
gctgcaggcggcggcggcggacagaccgcgccgaaggaagaagccgagactgggactgag
cctgagctagtgaaaacggacactgaggaaacataa
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