Ictalurus punctatus (channel catfish): 108269987
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Entry
108269987 CDS
T04658
Name
(RefSeq) AT-rich interactive domain-containing protein 1B
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108269987
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ipu03000
]
108269987
03021 Transcription machinery [BR:
ipu03021
]
108269987
03036 Chromosome and associated proteins [BR:
ipu03036
]
108269987
Transcription factors [BR:
ipu03000
]
Eukaryotic type
Helix-turn-helix
ARID
108269987
Transcription machinery [BR:
ipu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
108269987
Chromosome and associated proteins [BR:
ipu03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
108269987
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
108269987
NCBI-ProteinID:
XP_017331690
Ensembl:
ENSIPUG00000009593
UniProt:
A0A2D0RP08
LinkDB
All DBs
Position
9:22996299..23220040
Genome browser
AA seq
2129 aa
AA seq
DB search
MAAQVASVPAASNNKSKTLTGVLGQDLNSGKRAGGIGDVRSANNNTNINPANSNNNNVDR
RCDDLSRTGGSVTTSVSSSSSSSSSSSSSSSSMSSSSPGVETGFVANHKLKHAPGDLQLS
QFQQRAVQSNHGSQDASDNQRLGGRESAVGGNSEQHMLRKSAEEQPCRALAEPMSGSRYE
QGNLAPNLQASHAQGAGGIGGGGGKTPVSDFNHYFGSSRSGPCFDQHGAQQGFSTLMYPA
TSNHVDASPNSHEGHQKSQYGAYPGYGAAGYSNPASSQAKCAPVGSMNNAAGFARFPGQS
QHPTGATPTLNQLLTSPGPMMRYYEYNSGKDASSQYGCGGSGWPGQRTNPGAANSAQSAN
RNQVGMDFMVMKRSQMYGMSSSPYSQQQQGVPYPSQPYGSPSTHRYPMAMQGRGQMNMGS
MPYPQQQVPAHFGQQGMGGYCPQGQPGYYSQSQQSQQPQQQAPYSQPHTTTQQETQESYG
NRNQPVGNAGKPNHDEMGLIQQDRPSSLPDLSGSIDDLPMGTEAPLNSAISVSAPTNSQG
EQGNQTQSAFSPHNSPRVSSMRPGPSPPPVASTSPAGSNQISPPNGTGSQLAPQTPGNLS
DTGSNSSMNQIAMAQDRAFMRRSQNQYGPQQSGPPMSPHLSTRNQMQHGMSVYQQNSTGS
YGPPSGPYGPQGNYSRHPYGGMTNANCSGLGPGMNNSLGVNASSPMHGQGPGQPMSMGRA
PGPPGNRVYLGGGNSMAPTSPSMPQSAGPGMGPPAGNVNRKAIDGPMATMHPTGNSAQGR
QGGYCGMMGTGSSYSHQLGNATAMMSPQSCSSTTSPSGPMGEGGEVAMPADSKQKSSSKE
EVIPVAEPHKPPKDGSSSQCGSEPPTPSALTPSPASLSSYHGDDSDSISSPAWPKTPSSP
KSGSGTTTNDKVSRLYEMGSEPERKSWVDRYLSFMEDRGTPVPQLPVVGKKQLDLCKFYI
AVKDLGGLAMVNKNKKWRELSSTLGLGTSSNAASSLKKHYIQYLFAYECKVERGEEPPSD
SCPIADGKKQGKTGPPSPATSGSLQGPQTPQSTGSSSMPEMPGELKPPTPATTPQGHISI
PGNSNNSVSIQDPFSDGSDPAFQKRNILSSGGTYQSAMNPMDSMMRMQYENKDHFAGMRK
AVGGEPCMPAQMTPAGMQDIYGRSPSSGPMAGLGMGQRSQYHYGPGYDRRSDHLMGMDGN
MGPHGNQGNMSHANNDGSMYSPNRYHNQQRHDAYGQQYPGMPYGVHPPGMYAQQGYKRPL
DGMYSPPAKRHEGEVYGMQYGGPQTDMYGQYGGNYPERRPMQTPFPYPYSRERLQNANQG
PQHHPVQHSMMGTGHSVPTDGGPTHMWPSRTDMAYSYSNRHGTPSQSSPYPGMGRIDDMD
GVRADNQWPGHQRQTPYISGHSNSMALMNSRPPSSYQTSNHISCEPSPGSFQRSIEAHMQ
PNKMAFMQSMKMHKPGMPVPSGSGSGVPGQMPPNMRRDYPMGCVEGTQPLLKPRRKMTSK
DTGTPEAWRVMMSLKSGLLAESTWALDTINILLYDDSTVASFNLAQLPGFLELIVEYLRR
CLIEIFGILEEYEVGTLGQKTLLGPVEDEREQDSLKSDILCEPESSQEPEKNSTDSLPKS
SENDSELNQERQNKNEILKNERDEKDEQRTEDITEPLEGHSSTMPEPRPKQASKYDKLPV
KIVPKDDFIMDISDELGHVQKFDSGLLHWKAGGGDSTSYILTHFESRKECTNISVQSKQH
CCALKSEEVHNNQVATIDDVLSPRLRALSEEENSSTSLSNSSYSLRLFENHKGITLLEDE
PHCPDEPPLCTKSSWQDSLTKRCICVSNIIRSLSFLPGNDTEMSKHPGLILILGQLLLLH
HEHPERKRTVPSYDKEEYPKEEEIKPCSGDEWWWDCLTALRENTLVTLANIAGQLDLSIY
PESICLPVIDGLLHWMVCPSAEAQDPFPSAGPHSQLSPRRLVLECLCKLSVQDGNVDLIL
ATPPFSRQEKFFATLVRQVGERKLQVYREMAVAMLSNLARGDSSAARGIAVQRNSVGNLV
GFLEDGITMTQYHQNPHSLLHMGHPPMEQPSVNMMCRAAKALLELAKVEENRPEFVLYES
RLLDIAISSVLNVNVVAIICEVLFHLGKS
NT seq
6390 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgcaagtggcatcagtcccagccgcgtctaataacaagagcaagactttaact
ggggttttgggacaagacttaaactccgggaaacgcgcaggaggaataggtgacgtcaga
agcgcgaataacaacacaaatattaatcctgctaatagtaataataataatgtggatcgg
cgttgtgatgacctgagccgaaccggtggaagcgtgacaacttcggtgtcctcctcatca
tcatcttcatcatcatcttcatcctcatcatcatcaatgtcatcgagctctcctggtgta
gaaacgggttttgtggctaatcataagctcaagcacgcgcctggagaccttcagttgagc
cagtttcagcagcgcgctgtacagagtaaccacggcagccaagacgcctccgacaaccag
agattaggaggcagggagagtgctgtaggaggcaattctgagcaacacatgttgagaaaa
agtgcggaagaacagccttgtagagcccttgcagagcccatgagtggcagcaggtacgag
caaggcaacttggcaccgaatctccaagcctcccatgcccagggcgcagggggaatagga
ggaggtggtgggaaaacaccagtctctgacttcaatcactattttggaagttcaagatca
ggaccttgcttcgatcagcacggcgcacagcagggctttagcactttgatgtatcccgct
acttctaatcatgtggacgcgtctccaaactcccacgaaggacatcagaagagtcagtac
ggcgcgtatccgggctacggggctgcgggatacagtaacccggcctccagtcaggccaaa
tgcgccccggttgggtccatgaacaacgccgcggggtttgcacgtttcccgggacagagt
cagcatcctacaggcgcaacgcccaccctgaaccagctgctcacttctcccgggccaatg
atgcgatactatgaatacaacagcggcaaagatgcgagctctcagtacgggtgtggaggc
tcggggtggccgggacagagaactaatcccggggctgcaaacagcgctcaaagcgccaac
cggaaccaggtgggtatggacttcatggtgatgaagcgctctcagatgtacgggatgagc
agtagtccatactctcagcagcagcagggtgtcccctatcccagccagccatatggatct
ccttctacacatagatacccgatggccatgcagggcagagggcaaatgaacatgggttcg
atgccatatcctcaacaacaggtacctgctcattttggccagcagggcatgggagggtac
tgtcctcagggccagcctgggtactacagccagtctcagcaatcccagcagcctcagcag
caggcaccctacagccagcctcatactaccactcagcaggagactcaggagagctatgga
aacagaaaccagcctgttgggaatgctgggaaacccaaccatgatgagatgggattgatc
cagcaggaccgtccctccagcctgccggacctgtcaggctccatcgatgacttacccatg
ggaaccgaggctcctctcaactcggccatcagtgtctctgctcccaccaacagtcaggga
gaacaaggtaaccagacccagtctgcgttttcaccacacaactctcctcgtgtctccagc
atgcgccctgggccctcgcctccacccgtagcctccaccagtcctgccggttccaaccag
atctcccctcccaacggcacaggctcccagctggctccacagacccctgggaacttatct
gacactggctccaactccagcatgaaccagattgccatggctcaggacagagccttcatg
cggaggagtcaaaaccagtatggtcctcagcaatcaggaccgcccatgtctccacatctg
tctaccaggaaccagatgcagcatgggatgagtgtctatcagcagaactccactggttcc
tacggacctccgagcggtccctacggcccacaaggtaactactcgagacatccctatgga
ggaatgaccaatgctaactgcagcggtctggggcctggcatgaacaacagcctgggcgtg
aacgccagcagccctatgcacggacaaggaccagggcaacccatgtccatgggccgtgcc
ccaggaccccctggtaatcgagtctacctaggtggtgggaacagcatggcacccacttct
cccagcatgccacagtctgctggtccagggatggggcctcctgcaggaaatgtgaatcgt
aaagctattgatggtccaatggcaacaatgcatccaacaggcaactctgcacaggggagg
cagggtggttactgtggaatgatgggcaccggttcgtcgtacagccaccagttgggaaat
gccacagctatgatgtccccacagagctgcagctccaccacgtctccttcaggccccatg
ggggaaggtggagaggtggcgatgcctgcagactccaagcagaaatccagcagtaaggag
gaagtgattcctgttgccgaacctcacaaacccccaaaggatggctccagctctcagtgc
ggctcagagccccccactccctcagccctgacccccagccccgctagtctctcctcgtac
cacggggatgacagtgacagcatcagcagtcctgcatggcctaaaaccccctccagtcca
aagtcaggctctggcaccacaacgaatgacaaggtttctcggctgtacgaaatgggaagc
gagccagagagaaagagctgggtggatcgctatctgtccttcatggaggacagggggaca
ccagttcctcagctccctgtcgtgggcaaaaaacagctggatctgtgcaagttctacata
gctgtaaaggacctaggtggcttggctatggtgaataagaataagaaatggcgagagctc
tcctccacgctcggtttaggcacgtccagtaatgctgctagctctctgaagaagcactac
atccagtatctgtttgcctacgagtgtaaggtggagagaggagaggagcctccatctgac
tcctgccctattgctgacggcaagaaacaaggcaagactgggccgccgtctcctgccact
tctggctctctacagggccctcaaacccctcagtcgacaggcagcagctccatgcctgag
atgcccggagagctaaaaccacccacgccagccaccacgccgcaggggcacatcagtatc
ccaggcaacagcaacaattcagtcagtattcaagacccattctcagacggcagcgatcct
gcgttccagaaaaggaatatactgagctctggaggcacttatcaatcagccatgaacccc
atggactccatgatgaggatgcagtatgaaaataaggaccattttgcaggaatgaggaaa
gcggtaggtggagagccatgcatgccagctcagatgacccctgctggcatgcaggatatc
tatggcaggagtccctcgagtggccccatggcaggactgggtatgggtcagcgttctcag
taccattacggaccaggatatgaccggagatcagaccatttaatggggatggatgggaat
atgggtccccatgggaatcaaggcaacatgagtcatgccaacaatgatggtagcatgtac
tctcctaacagataccataatcaacaaagacatgatgcctatggacagcagtatcctggt
atgccatatggcgtccaccctccagggatgtacgctcaacaaggttacaagcgaccccta
gatggaatgtatagcccccctgctaagaggcatgaaggagaggtttatgggatgcagtat
ggaggcccacagacagacatgtatggtcagtatggaggaaattatccagagcgccgaccc
atgcagactccctttccttatccgtatagccgggaacgtctacagaacgccaaccagggg
cctcagcatcatcctgtccagcacagcatgatgggtactggacattcagtgcccacagat
ggcggcccaacacacatgtggccctcaaggacagacatggcctattcttactctaacaga
cacgggacgcctagccagagctctccatacccaggaatgggacgcatagatgacatggat
ggagtcagagcagacaatcagtggcccgggcatcagcgccaaacgccatacatatccggt
cactctaactccatggctcttatgaattcacggcctccatcttcctaccagacctctaac
cacatctcctgtgaaccgagcccagggtcttttcagcgctctattgaagcacacatgcaa
cccaacaagatggcctttatgcagtctatgaagatgcacaagccgggaatgccagtgcca
agtggctcggggagtggagtcccgggtcagatgccacccaacatgaggagagattatcca
atggggtgtgtggaagggacccaacctcttctgaaacctcgacgcaaaatgacctcaaaa
gacactggaacccccgaagcctggcgagtgatgatgtcactcaagtcaggtcttctggca
gaaagcacatgggctctggatacaatcaacatccttctttatgatgacagcactgtagca
tcattcaatctggctcaattgcctggattcctagagctcatcgttgagtatttaagaaga
tgcttgattgagatctttggcatcttggaggaatatgaggtggggactcttggccagaag
actctgcttggtccagttgaggatgaaagagagcaggactcgctcaaatcagacatcctt
tgtgagccagagtctagccaagaaccagaaaaaaactccacggactctctgcctaaatct
tctgagaatgactcagagttaaatcaggaacgtcagaacaagaacgagatattgaaaaat
gagagagatgagaaagatgaacagagaactgaggatattaccgagcctcttgagggccat
tcgtcaacaatgcctgaaccaagacccaaacaggccagcaagtatgataagctgcctgtc
aagattgttccaaaagatgacttcatcatggatatttctgatgagcttggtcatgtgcag
aagttcgacagtggactacttcactggaaagcaggtggtggggactccacaagctacatc
ttaacacatttcgagagccgaaaggagtgcaccaatattagtgtccagagcaaacaacac
tgctgtgctttaaaatcagaggaggtgcataacaaccaagttgcaactatagatgatgtg
ctgtccccaagattgagagctctctctgaggaagaaaactcatcaacctccttgagcaat
tcctcatattcattacgcctttttgagaaccacaaagggatcactctactggaggatgaa
cctcactgtccagatgaacctccactgtgcacaaaatccagctggcaggactctttgacc
aagcgctgcatatgtgtctctaatatcattcgcagcctgtcgttcctccctggaaacgat
actgagatgtccaagcatccaggcctgattctgatccttggccaattgctgctgttgcac
catgagcacccagagaggaagagaaccgtccctagctatgacaaagaagagtaccctaag
gaggaagaaatcaagccctgcagcggggatgagtggtggtgggactgtctgacagcactg
agggagaacactttggtcacgttggccaacattgcagggcagctagacctgtcgatctac
ccagagagtatatgccttcccgtcattgacggcctgctccactggatggtgtgtccttca
gctgaggcccaggacccgtttccttcagcagggccacattcacagctcagcccaagaagg
ttggtgctcgaatgtctgtgcaagctcagcgttcaggatggcaacgtagacttgatcctg
gccacaccaccctttagtcgtcaggagaagttctttgccacactggtgcgtcaggtggga
gagcgcaaactacaagtttaccgcgagatggcagtggctatgctgtccaacctggctaga
ggggattcttcagcggcgcgtggcatcgccgttcagagaaacagtgttggcaacctcgta
ggtttcctagaggatggaattaccatgactcagtatcaccaaaacccacacagtctgcta
cacatgggtcatcctcccatggagcaacccagtgtgaacatgatgtgtcgagctgccaaa
gcgctgctggaactggccaaggtggaggagaacaggcctgagtttgtactgtatgaaagc
agactgctggatattgccatctcgtccgtgcttaatgtaaatgtggtggccatcatctgt
gaagtactctttcacctcggcaagtcatga
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integrated database retrieval system
