Ictalurus punctatus (channel catfish): 108270067
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Entry
108270067 CDS
T04658
Name
(RefSeq) ribonuclease ZC3H12A
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108270067
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
108270067
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
UBA_6
Regnase_1_C
zf-CCCH_2
zf-CCCH
zf-CCCH_4
Motif
Other DBs
NCBI-GeneID:
108270067
NCBI-ProteinID:
XP_017331858
Ensembl:
ENSIPUG00000015158
UniProt:
W5U7U3
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Position
1:complement(20738421..20756917)
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AA seq
605 aa
AA seq
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MQPACQHGTSELQLKVDFFRKLGYSPQEVQSVLLKLGLDTDTNAVLGELVRSGARESPTT
SQESDDGSSGFSHHGGGGSRSKDLQKDIQCSPAVDEIDSDLKPIVIDGSNVAMSHGNKEV
FSCRGIELAVNYFLERGHRNITVFVPSWRKEQPRPDVLISDQHILAELERRKIVVFTPSR
RVGGKRVVCYDDRFIVKLAYDLDGIIVSNDTYRDLQSERLEWKRCIEERLLMYSFVNDKF
MPPDDPLGRHGPNLDNFLRKKPLLPDTKRQHCPYGKKCTYGIKCKFYHPERTSQSQRSLA
DELRDNARLSSSVHCCSKESRRSGASLRGPCHTESGFSSYFPSLEQELEYKLSLESAVCV
TRNQLSESMQHYWDDVPTKYQACKPASHTPLDWHSLYSTYLTNPSSSSDSGLGSYESQFS
EASQGHDDSCRISSRHNNRFYEQQDAPFVCTCSSESVVQPSIHQYPHSHHPPNGFDYGAL
QFRRPSSNRAYSLPNYMQPNELHHSQPKAGPDTVWLPQTRTAFSLPNPRHAIGPHRPADI
YGSSQGVLSLNTVPFEAEREETRKKLHAIFNPHLVDKVMGMFPKLKDAQQLAAEILKLKS
KGELF
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgcagcctgcttgccagcatggcacctccgagctccagctgaaagtggactttttccgc
aagctgggctattcaccacaagaggtacagtcggtgctgctgaaactaggcttggacacg
gacacgaatgctgtactgggggagctggtgcgttctggagccagagagtcacccacaacg
agtcaggagagtgatgatggaagctctggatttagccaccacggaggaggtggatccaga
agtaaagatctccaaaaggacattcaatgctcaccagcagtagatgaaattgacagtgac
ctaaaacccattgtgattgatggaagcaatgtggctatgagtcatggaaacaaggaagtt
ttttcatgtcgtggaattgagctggcagttaactacttccttgagagaggacacaggaac
atcacagtttttgtgccctcatggcgaaaagagcaaccaaggccagatgtcctcatttca
gatcagcatattctagcagagctggaaaggagaaagatagttgttttcacaccctcccgg
cgggtaggaggtaagcgagtggtctgctatgatgatcgcttcatcgtcaaacttgcctat
gatctggatggcattattgtgtccaatgacacctaccgtgaccttcagagtgagcggctt
gaatggaagcgctgtattgaggagaggctactcatgtactcctttgtcaatgacaagttc
atgccaccagatgacccacttggtcgtcatggcccaaacttggataattttctcagaaag
aaacctctgctaccagacaccaaacgccagcattgtccttatggaaagaaatgcacatat
ggaatcaaatgcaaattttatcaccctgagcgaaccagccagtcacagcgttcccttgca
gatgaactgagggacaatgctcgcctgtccagttctgtccactgctgttcaaaggagagc
cgaagatcaggagcttcccttagagggccctgccacactgagtctggtttcagttcatac
tttccatctttagagcaagagctggagtacaagctatccctggaatctgctgtttgtgtg
acaagaaaccaactcagtgaaagcatgcagcactactgggatgatgttcctacaaagtac
caggcctgcaagccagctagccacactcctctggactggcatagtctgtactccacatac
cttactaatccttcatctagctcagattctggacttggctcctatgagagccagttttca
gaggcatctcaaggacatgatgattcatgtaggattagctctaggcataacaacaggttt
tatgagcaacaggatgcaccttttgtttgcacttgctcttctgagtcagttgtccaacca
agcatccatcagtaccctcattcccatcatccacccaatggctttgattatggtgcactg
cagttccgtagaccctctagcaatcgagcctacagccttcccaattacatgcagcctaat
gagctccatcacagccaaccaaaagctggtcctgacacagtgtggctccctcagactcgc
acagcttttagtttacccaaccctcgtcatgctattggaccccacagacctgctgacatt
tatgggagcagccagggagtgctcagtctaaacactgttccatttgaggcagagcgagaa
gagacgaggaagaaactccatgcaatttttaatccccatcttgtggataaggttatggga
atgttcccaaagctaaaagatgcccaacaacttgcagcagagattctcaagctcaagtcc
aaaggcgagttgttctaa
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