Ictalurus punctatus (channel catfish): 108270134
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Entry
108270134 CDS
T04658
Symbol
snx27b
Name
(RefSeq) sorting nexin-27b isoform X2
KO
K17936
sorting nexin-27
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ipu04131
]
108270134 (snx27b)
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
ipu04990
]
108270134 (snx27b)
Membrane trafficking [BR:
ipu04131
]
Protein recycling
Others
Others
108270134 (snx27b)
Domain-containing proteins not elsewhere classified [BR:
ipu04990
]
Phox homology (PX) domain-containing proteins
Sorting nexins
108270134 (snx27b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PX
PDZ
RA
PDZ_6
SNX17-27-31_F1_FERM
RA_2
VirE3
SNX17-31_F2_FERM
PDZ_2
USP7_C2
SNX17_FERM_C
RA_3
DarA_N
Motif
Other DBs
NCBI-GeneID:
108270134
NCBI-ProteinID:
XP_017331996
Ensembl:
ENSIPUG00000003297
UniProt:
A0A2D0RPA7
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Position
1:complement(8422577..8457344)
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AA seq
556 aa
AA seq
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MADVVEGEDVRVSVPSALRSSRHGSGGNVTAGPRLVRIIKSDSGYGFNVRGQVSEGGQLR
SINGELYAPLQHVSAVLPGGAADRAGISKGDRILEVNGVNVEGATHKQVVDLIRAGEREL
VLAVLSVPQPETDSLDPGDDGSSQSCYDYSDKQAVPISVPTYKHVEQNGERFVVYNVYMA
GRQLCSKRYREFAILHQNLKKEFATFTFPKLPGKWPFSLSEQQLDARRRGLEEYLERVCS
VRVIGESDIMQEFLSESDENYNGVSDVELRIAMPDKTTVTVRVRKNCTTDQVYQAVVLKV
GMDSITASYFALFEVINHSFVRKLAPNEFPHKLYVQNYTSAVPGTCLTLRKWLFTTEEEI
LLNDNELAINYCFHQALDDVKRGFIKAEEKSYQLQKLAEQRKVSMYLSMVRSCEGYNEII
FPHCACDSRRKGHVITAISIRHFKLHACTEEGTLENQVIAFEWGEMQRWDTDEEGMAFCF
EYARGEKKPRWVKIFTPYFNYMHECFERVFCELKWRKEVEEEATDKDNKNCSKDEYLPAV
EAQKGWRHLRQEIVTP
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgtagtggagggagaggacgtgcgcgtgagtgtgccctccgcgctgcgctct
tcacggcacggctccggcgggaatgttactgcgggcccgcggctcgtccgcattatcaag
tcagactcgggctacggcttcaacgtccgcgggcaagtgagtgaaggtggccagctgcgg
agcatcaatggcgaactgtacgcgccgctgcaacatgtcagcgccgtgctaccgggcggt
gcggcggacagagccgggatctccaagggcgaccgcatcctcgaagtgaatggcgtgaat
gtagagggagccacacacaaacaggtggtggatctcatccgagctggagaaagggagcta
gtcctcgctgtcctctccgtgccccagccagagacggacagcctggacccgggagacgac
ggctcatcccagtcctgctacgactacagcgacaagcaggctgtgcctatctctgtgccc
acctataaacacgtggagcagaatggcgagaggtttgtggtctataatgtgtatatggct
ggcagacagctctgctccaagcgctacagggagtttgccattctgcatcaaaaccttaag
aaggagtttgccacttttacgttccccaagctgcctgggaagtggcccttctctttgtct
gagcaacagctggacgcccgaaggaggggactggaggaatacctagaaagagtgtgttct
gtgcgagtgattggtgagagtgatataatgcaggaattcttgtctgaatcagatgagaac
tataatggagtctccgatgtagagttgaggatagccatgccggataaaaccacagtaact
gtcagagttcgaaagaactgcactacagaccaggtgtaccaggctgtggtgttgaaggtt
gggatggacagtattaccgccagttattttgctctctttgaagtcattaaccactcattt
gtgcggaaactggctccgaacgagttccctcataagctgtacgtgcagaactacacatcg
gccgttcccggtacctgcctcactctgcgcaagtggctcttcaccactgaggaggagatc
ctgctgaacgacaacgagctcgccatcaactactgctttcaccaggcactggatgatgtg
aagagggggtttattaaagcagaagagaaatcataccagctgcagaaactggctgaacag
aggaaggtttccatgtacctaagtatggtgaggtcatgtgaaggctacaatgagatcatc
tttcctcactgtgcttgtgactcacgccgcaagggccacgttatcacagccattagcatc
cggcacttcaaactgcacgcctgcactgaagagggcactctagagaatcaggtgatagcg
ttcgagtggggcgaaatgcagaggtgggacactgacgaggagggaatggctttctgcttc
gagtacgcgcgaggcgagaagaagccgcgctgggtcaaaatcttcactccatattttaac
tacatgcacgagtgcttcgagcgggtcttctgtgagctcaaatggcggaaagaggttgaa
gaggaagcgacggataaagacaataagaactgtagcaaagatgaatatcttccagctgtt
gaggcacagaagggatggaggcacctgagacaggagatcgtcaccccctga
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