Ictalurus punctatus (channel catfish): 108270135
Help
Entry
108270135 CDS
T04658
Name
(RefSeq) protein GREB1 isoform X2
KO
K27477
growth regulating estrogen receptor binding 1
Organism
ipu
Ictalurus punctatus (channel catfish)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
cpSF2-GREB1
GREB1_2nd
GREB1_C
GREB1_N
TAGT
TGF_beta_GS
Pox_A3L
MgpC
Motif
Other DBs
NCBI-GeneID:
108270135
NCBI-ProteinID:
XP_017331992
Ensembl:
ENSIPUG00000014159
UniProt:
A0A2D0RNA9
LinkDB
All DBs
Position
9:6147654..6191510
Genome browser
AA seq
1822 aa
AA seq
DB search
MGNSYAGQLRTTRFEEVLHYSIEASLRSNTVVPRPVFSQLYLEPEQRSLSREGQMKNEED
DDDENGSESNSPPIPYQMKPAPDGSCTTDGFCQAGKDLRLTSMSTENLDVPPGFLLVGAK
SPSIPGHILVCAVDRRFLPDERGHNALLGFSGNCMGCGEKGFRYFTEFSNHINLKLTTQP
KKQKHLKYYLLRNAQGALVKGPSICWKGIDSHVRQTSSNVSGGPEEQPSGPVASNPLPNS
GHVGVSTANYTDLNTHLHVPETSPAMTNGSHIPASQQSVSQPALVASGPGRSTGSMANTG
PPKKRHKGWSPESTGHTESSSRPVASNTVCGTKSVSQGSSPSMPPEESVAVPNNLFQTCG
LQPVIFKGHGDLPHLCGNTSEVLVNGWLQACYRSSQNLPRVYEQYGASSIQPLSTEMQVL
LTVYYLVQLGPDQIPLMEDLEQILMRSWRESHLTEIRQYQQSHAQFPAPLPGLAQPLTSS
QLPWLAKLATSSCGDTVLVLDTAPSLSEALVDTFRRLMEGKLSHTHFLVIICMGRSQGTE
SCVVVTGKHQARALAESMLSSSECGREISQELSSGITAELDAYVSSLGPDGNVESFLEKV
NTETYSVSAQAHGKECAAEAICTEYRVEWHEIRPIQLAVARKLLSHVCAIADSSTHNLDL
GSFDKVEFLICVPPSEVTFQQVVLHLWNSGVLQELGMDQNCLSPKDAEQYVVKLDQTATA
KINGLIQKSKLNPYTLFILVHDHAHWDVSSEQCGRVGGLSSSGLVDSLLNCKQIQEAPNV
LILHVTSFPFALQTQYTRISPYNEIHWPSTFSNDVDLYHEKTKYFGVSELLESTRSGSGL
PLLRFDSSFESMVTALEERFPKLHSSVIRTQVLLQHYSVALLAAARGQVQLQKHTSVETL
EIVQCLLGSTRCCPSHHGYMLLLRIPFPCLAALAHQRLCHIRDRLGLHKHFEIVLGDPTS
GIIVGKHFLSQLRVWLKIQDPDWTPRTYLDLEALPCILIFTGMDPMGESLPRSLKYCDER
VVSCCALQRTALEQELGLAAYLVHVEEQRQHGLRVSSDLSESDPDKLSSTDNEEEESVVD
VSTALPGQDHSQQTQDEFSPNKPSRSSKSTSPDSLSSSQTSPQLYCCSWARNINRPPVVL
LPKALYDLITRVDASGLPKPMSFLPHPCVEWASSFRPLLSKMMTCTEQSLYYRQWTVPKP
QHMDSSNWAEGRTDNFHPRRLLLSGPPQVGKTGAYLQFLGILSRMLIRLMEVDVFDEEDI
NCNCQCELLKYHQAIASWPNADTLRGMPFDFTIHDPKYEDISIIYSPDFTPNVERNPRRQ
EDVYLRRRTARIKLSKYAAYNTYHHCEQCHQYMGFNPRYQLCESTLHAFTFSHLLLGEEI
QLYFIIPKSKEHHFFFSQPGGQLESMRLPLSSDWNPDCIKSPIFTPTTGRHEHGLFNLYH
AMDGASHLHILVIKEYEMAVYKKYWPNHIMLVLPTIFNGAGIGAAHFLIKELSFHNLELE
RSRRVEHGSHPQDVWPFIILADDSCVMWNSVDIDFKSTAGPERNVSLKQVLQHMESSPDI
TQYGLCGLRKWSSRGAGPGQRREPFSRGHLHDFLLLNVDLTQDVQYNQNRFTCDDVDFNL
RVHSAGLLICRFNNFSVMKKQIAIGGYRTFIIKTKMTDVPTTAQPSQYICAPDSKHLFLA
TPGQLLLEKYLQHTSQRLFPLSTGNYSHPVLSVDCYLNLGPEVTVCFVSSRPHSVNISTA
GLLFSGLLLYFCDSFVTPGFLKKFQFLKGATLCVICPNRSALRQTVVRLELEDEWRFRLS
DEFQTANAKEDQPLFFLTGTHI
NT seq
5469 nt
NT seq
+upstream
nt +downstream
nt
atgggaaactcatatgcagggcagctgcgcaccacacgtttcgaagaggttctgcactat
tccatcgaggcatctctgcgttccaacactgtagtgcccagaccagtgttctctcagctg
tatctagaaccagagcagaggtctctctctcgagaaggccaaatgaaaaatgaggaagat
gatgatgatgagaatggctcagagtctaacagtcctcccattccatatcagatgaagcct
gctccagatggctcttgcaccactgacggattctgtcaggcgggtaaagacctgcgactg
acctcgatgtccactgaaaatctggacgtgccaccgggatttctgctggtcggggccaaa
tctcccagtatacctggccacatactggtgtgtgcagtggatcgacgatttctcccagat
gaacgtggacataatgcacttttaggcttctctgggaactgtatgggctgtggtgagaaa
ggattccgctacttcactgagttctccaaccacatcaacctgaagctcaccacgcagccc
aaaaagcagaagcacttaaaatactatctgctccgcaacgcacagggtgcgctggtcaag
ggcccatccatctgctggaagggaatagacagtcatgtaagacagacctcctcaaatgtg
tctggtggtccagaggagcagccatctggtcctgtagcgagcaacccactccctaattca
ggacatgtgggtgtaagcacagccaactacacagatctgaacacacatctccatgtacct
gaaacgtccccagcaatgaccaatggcagccacattccagcatcccagcagtctgtgtcc
cagccagccctggtggccagtggtccaggaagatccacaggatctatggcaaacactgga
ccacccaaaaagagacacaagggctggtccccagaatctacaggacacactgaatcaagc
agtagacctgtggcctccaacacagtctgtggcacaaaatcagtgtctcaagggtcttca
ccctccatgcctccagaggagtctgttgcagtgcctaataatctgttccaaacatgtggt
ttgcaaccagttatcttcaaagggcatggggatctgccacatctatgtgggaacacaagt
gaggtgttggtcaacgggtggttgcaggcatgttaccgaagctctcagaacctcccccgt
gtttatgagcagtatggagcctcctccatccagccgctctccactgagatgcaggtcctg
ttgactgtctactatctggtacagctgggtccagaccagatacccctgatggaagacctg
gagcaaatcctcatgcgctcttggcgtgagtcacacctgacggaaatccgtcagtaccag
caaagtcatgcccagtttcctgctccactgcctggcctggcacagcccctaacctcctct
cagctcccttggctggccaagctggccaccagctcctgtggtgacaccgttctagtgttg
gacacagcaccctcattgtccgaggcactggtagacaccttccggaggcttatggagggc
aagcttagtcacacacattttttggtgatcatttgcatgggcaggagccaagggactgag
tcctgcgtagtggttacagggaagcaccaggcacgagcacttgcagagagtatgctctcc
tcaagtgaatgtgggagagaaatcagtcaggaactttcctctgggatcactgctgaatta
gatgcctacgttagctccctaggtccagatggaaatgtggagagcttcctggagaaagtc
aatacagagacctatagcgtttcagctcaggcacatggaaaggaatgcgctgcagaagcc
atatgtacagaatatcgggtagagtggcatgagattcggcccattcagctcgcagtggca
cggaagctgttgtcccacgtgtgtgcaattgctgattccagcacacacaacctggacctt
ggctcttttgacaaggtggagttcttaatctgtgtgcctccttctgaggtgaccttccag
caagtggtcctgcacttgtggaactcaggggtccttcaagaattaggcatggaccagaac
tgtttgtccccaaaggatgctgagcagtatgtggtaaaattagatcagactgctacagct
aagatcaacggtctcattcagaaatcaaagttgaacccatataccctcttcatactggtg
catgaccatgcacattgggatgttagtagtgaacagtgtgggagggtgggtggcttgtcc
agctcaggactggtggacagtctgctgaactgcaagcaaattcaagaggcacccaatgtc
ctgattctccatgtgacctcattcccctttgccctgcagactcaatacacacgcatcagc
ccctacaatgaaatccactggccatcaacattcagcaatgatgtggatctgtatcatgag
aaaacaaaatactttggtgtgtctgagctgctggagtccacacgatcagggagcggcctt
cctctgctgcgctttgacagttcatttgagagcatggtcactgccctggaagagaggttt
ccaaaattgcacagctccgtcatccgcacccaggtgcttctccagcactattctgtggct
ctattagctgcagccagaggtcaggtccagctacagaaacacacctctgtagaaaccctg
gagatagtgcagtgtcttctgggctcgacgcgatgctgccccagccaccatgggtacatg
ctcctgctgcgtatacctttcccatgtctggcagcactggcacatcagcgtctctgtcac
atacgtgaccgcctgggcctccacaaacactttgaaattgtgttgggagaccctacatct
gggatcattgtgggcaagcacttcctgagccagctgagggtatggctgaaaatccaggac
ccagactggacgcctcgcacatacctagatttagaggctttgccctgcatcctcatcttt
actggtatggatccaatgggggagtcattgccaaggtctctgaagtactgtgatgagcgt
gtcgtaagctgctgcgctctgcaacgcacagctctggagcaggaacttggtctggctgcg
tacttggtgcatgtggaggagcagaggcagcatgggctgcgtgtttccagtgacctatct
gagagcgatcctgataaactcagtagcaccgacaatgaggaagaagagtctgtagtggat
gtgagtactgctctccctggccaggatcactcccagcaaacccaggatgaattttcccct
aacaaaccaagccgatcctcaaaatccacctcccctgactccttgtcatcttcgcagacc
tctccacagctctactgctgctcctgggcacgtaacataaacaggccgcctgtggtcctc
ctccccaaggctttgtatgatctgatcaccagggtggatgccagtggtttgcccaagccc
atgtccttcctccctcacccatgtgtagagtgggccagctctttcaggcccctcctcagc
aagatgatgacatgtacagagcagtctctgtactacaggcagtggactgtacccaaacct
cagcacatggacagcagcaattgggccgagggacgcactgacaactttcaccctcgccgg
ctgctcctcagtgggccacctcaagttggaaagactggtgcatatctgcagttcctgggc
attctctctcgaatgctaatcaggctcatggaggtagacgtctttgatgaagaggacatc
aattgcaattgccagtgtgagttgcttaagtatcatcaggccattgcatcatggcccaac
gctgacactttgagaggaatgccttttgactttaccatccatgaccccaaatacgaggac
atcagtatcatctactcccctgactttactccaaatgtggaacgaaacccccgacgtcag
gaagatgtgtaccttcgtcgtcgtacagcccggataaaactctccaaatatgcagcatat
aatacttaccatcactgcgagcagtgccatcagtacatgggattcaaccctcgataccag
ctgtgtgagtctaccctgcatgccttcaccttctctcatctgctacttggggaggagata
cagctctattttattatccccaaatccaaagagcatcacttcttcttcagccaaccagga
ggccagcttgagagcatgagactgccccttagctctgattggaatcctgattgtataaag
agtccaatatttacacccacaacgggtcgccatgagcatggcttgtttaatctatatcat
gccatggatggagcctcccacttgcacatcttggtcatcaaagaatatgagatggctgtc
tataagaaatactggcccaatcacatcatgttggtcctgcccaccatcttcaacggagct
ggaataggtgcggcacatttcctaattaaagagttgtcctttcataatctggagctggaa
cgcagtcggagagtggagcatggcagtcatcctcaggatgtctggccctttatcatcctg
gcagatgactcctgtgtcatgtggaacagtgttgacattgacttcaagagtactgctgga
ccagagaggaatgtgtcactgaagcaggtgctgcagcacatggaatcatctccagatatc
actcagtacggcttgtgtggtctgaggaagtggtcaagccgtggagctggccctggacaa
aggagagagcccttctcacgaggacacctacatgatttcctgctcctcaacgtggacctc
actcaggatgtgcagtacaatcaaaaccgatttacgtgtgacgatgtagacttcaacctt
cgtgttcacagtgctggccttctaatttgccgctttaacaactttagtgtgatgaagaag
cagattgccatcgggggatatcgtacattcatcatcaagaccaagatgactgatgtacca
accacagctcagccttctcagtatatctgtgccccagatagcaagcacctgttcctggct
actccaggtcagcttctgctggagaaatacctccaacacacaagtcagcggcttttcccc
ctgagcactggcaattatagccatccggttctttctgtcgactgctacctcaacctgggc
cctgaggtaacagtgtgttttgtcagctcaagaccacactccgtcaacatcagcacagca
ggtttgcttttcagtggcctcctgctctacttttgtgactctttcgtcacaccgggcttc
ctcaagaagttccagtttctgaaaggggcgactctgtgcgtaatctgcccaaaccgcagt
gctctccgtcagacagtggtgcggcttgagctggaggacgagtggcggttcaggctgagc
gatgagtttcaaacggccaatgccaaagaggatcagccactcttctttctcacagggaca
cacatctga
DBGET
integrated database retrieval system