Ictalurus punctatus (channel catfish): 108270153
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Entry
108270153 CDS
T04658
Name
(RefSeq) serine/arginine repetitive matrix protein 1 isoform X3
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03013
Nucleocytoplasmic transport
ipu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108270153
03015 mRNA surveillance pathway
108270153
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108270153
03041 Spliceosome [BR:
ipu03041
]
108270153
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
108270153
Spliceosome [BR:
ipu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
108270153
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
108270153
NCBI-ProteinID:
XP_017332027
Ensembl:
ENSIPUG00000016845
UniProt:
A0A2D0RNE5
LinkDB
All DBs
Position
9:29741810..29755580
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AA seq
801 aa
AA seq
DB search
MDAGFFRGTSAEQDNRFSNKHKKLLKQLKFAECLEKKVDMTKVNLEVIKPWITQRVTEIL
GFEDDVVVEFVFNQLEEKNPDAKMMQINLTGFLNGKNAREFMKDLWPLLLSAQENIAGIP
SAFLEQKKEEIKLRQESLAVLKKVDEDKKDRESKEKAQNRSPKRRKSRSPAKRERKRSHS
RSPRRNPSPPALPLPSPPSQKPEPQPEPDQSESSKPEPLVLEASSTSDLANDAKPDSVSE
VPKDASPEKPAKAEDKPKPRDPKERDREKDGRRDRPRHRTRSRSPRPRRRHRSRSRSYSP
RRKPSPRRRVSPRRRSPPRRPPPSRHRRSRSPARRRRSRSRSSSGSSSSRSPHKRPAKRG
SVTPPRKQPRRTDTSSSPSGRRRSPSGSNRRPAGRNESPSPAPKPRRSDLSESEEDKLGK
GAPVDSVQQRRQYRRQNQQSSSETGSSSSSSEDEGPRRPGRGPPARNGDIRRRRSHSPVS
PRRRHRDASPRKRRSPSPRRHRSPSPRRRRSPSPPPRRRSPSPPPRRYSPPIQRRYSPLP
LSTHKRRPSPSPAPPKRSSPRSSSSPPPRSRRSPPMSSSGRQGSPQSRYPPAGSSPQRRG
QSPAHGRAIRRVSRTPERTPPCKTQRGSQSPRPMRRQSSRSRSASPDRFPASSAAASGSL
KRPAPASASPSPSPARSASGSPPPPAPPPPPPAKKASSASPSPSPNKNSDVDVGKKKKKK
KEKKHKKDKKHKKHKKHKKEKSAAAAPGDGQENARVEEEHESDQKKESESEVDDSLDDLE
KHLREKALRSMRKAQISPPQS
NT seq
2406 nt
NT seq
+upstream
nt +downstream
nt
atggacgcggggtttttccgcggcaccagcgcggagcaggacaaccgcttcagtaacaag
cataagaagttgctgaagcagctgaagtttgcagaatgtctggagaaaaaggtggacatg
accaaagtaaacctggaggtcatcaagccgtggatcacgcagcgcgtcacggagatcctc
ggcttcgaggacgacgtcgtcgtcgagttcgtcttcaaccagctggaggagaagaatccg
gacgctaagatgatgcagattaacttgaccggtttcctgaacgggaagaacgcacgtgag
ttcatgaaggacctctggcccctgctgctgagcgcccaggagaacatcgccgggatcccg
tccgcctttctcgagcagaagaaagaggagatcaagctcagacaggagtctctggcagtt
ctgaaaaaggtagacgaagataagaaagacagagagagcaaagagaaagctcagaacagg
agtcccaaacggagaaaatctcgttcaccggcaaagcgcgaaaggaaacgcagccactct
cgctcgcctcgacgcaatcccagcccgccagctctgcccctgcccagtccacccagccaa
aaacccgagccccagccagagcccgaccaatcggagagctccaaaccagaaccgctggtc
ctggaggcctcctctaccagtgatttggcgaacgacgcaaaaccggattcggtgtctgag
gttcccaaggacgcgtctccggagaaacccgcaaaggcagaggacaaaccgaagccgaga
gatccgaaagaacgggaccgggagaaagatggacggcgagatcgtccacgtcatcgcacg
cggtctcgctcgccccgcccccggcgacgccaccggtcacgctctcggtcgtactcgccc
cggcgcaaaccaagtccaaggagacgcgtctccccccgacgcaggagtcctccgagacgg
ccacctccttccagacacaggcgcagccgctcacctgcccgcaggcggcgttcacgttct
cgctcgtcttcaggcagctcgtcctcgcgctcgcctcataagagacccgctaaacgcggc
tccgtcacgccgcccaggaaacaaccacgccgcactgacacgtcctccagccccagcggg
aggcgccgcagcccctcaggttcaaatcggcgacccgctggaagaaacgagtcgccgtct
cctgctcctaaacccagacgatcagacctatcagaatcagaggaggataagttggggaaa
ggggcaccggtcgattcggtccagcagcgacggcagtatcgcagacagaatcagcagtcc
tcttcagagaccggatcatcctcctcatcctcagaggacgaagggccgaggaggccaggc
agagggccaccagcaaggaacggcgacatcaggaggaggcggagtcactcacccgtgtcg
cctaggagacggcacagggatgcatcaccgagaaagagacgttctccgtctcctcgacgt
caccgctcgccttcacccagacgccgtcgctcaccgtcacctccacccagacgcaggtcg
ccctcgccccctcctcgccgctattccccgcccatccagcgtcgctacagccccttgcct
ctttccactcacaagagacgcccttctccttcgcctgctcctccgaagcgcagcagtcct
cgctcgtcttcctctccccctccacgctcacgccgcagcccacccatgtcctcctcagga
cgccagggcagccctcagagcagatacccacccgcggggtcgtctccgcagcggcgcgga
cagtctcccgctcacggcagagccatacgcagggtgtcgcgtacacctgagcgtacacct
ccgtgtaagacacagagagggtctcagagtccacggccaatgagaagacagtcatctcgt
tcgcgctctgcctctcccgatcgtttcccagcatcctcggcggcagcttccgggtctctc
aagcggccggctcctgcgtctgcgtccccgtctccttctcccgcccgctcggccagcggc
tctcctcctcctcctgcccctcctcctccacctccggccaagaaggccagcagcgcctcg
ccaagcccctcgcccaacaagaactctgatgttgatgtcggcaagaaaaagaagaaaaag
aaggagaagaaacacaagaaggacaagaagcacaagaaacacaagaaacacaagaaggag
aaaagcgccgccgcagcgccaggggatggacaggaaaacgctcgggtggaggaagagcac
gaatccgatcagaaaaaggaatcagagagtgaagtagacgacagtctggatgatctggag
aagcacctgagggaaaaggcactgcgctccatgaggaaagcccagatttccccgccccag
tcctga
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