Ictalurus punctatus (channel catfish): 108270165
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Entry
108270165 CDS
T04658
Name
(RefSeq) gamma-aminobutyric acid receptor subunit rho-1
KO
K05190
gamma-aminobutyric acid receptor subunit rho
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04080
Neuroactive ligand-receptor interaction
ipu04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
108270165
04082 Neuroactive ligand signaling
108270165
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ipu04040
]
108270165
Ion channels [BR:
ipu04040
]
Ligand-gated channels
GABA-A
108270165
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Neur_chan_LBD
Neur_chan_memb
Sigma_reg_N
Ig_GpJ_C
Motif
Other DBs
NCBI-GeneID:
108270165
NCBI-ProteinID:
XP_047013733
Ensembl:
ENSIPUG00000006915
UniProt:
A0A979F0Y3
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Position
9:complement(21145782..21155868)
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AA seq
393 aa
AA seq
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MRPAFGGPPIPVGVDVQVESLDTISEVDMDFTMTLYLRHYWKDERLSFPSTNNQSMTFDS
RLVKKIWVPDMFFVHSKRSFIHDTTTDNVMLRVYPDGNVLYSLRVTVTAMCNMDLSRFPL
DTQTCSLEIESYAYTDDDLMLYWKKGNESLNTDDRISLSQFLIQKFHTTTKLAFYSSTGW
YNRLYIHFTLRRHIFFFLLQTYFPATLMVMLSWVSFWIDRRAVPARVPLGITTVLTMSTI
ITGVNASMPRVSYIKAVDIYLWVSFVFVFLSVIEYAAVNYLTTVQERTERKLREQLPCTC
GIAHPNEHMMVTTAYSDVDQSTTGNYGMPDNEVRQERIFAQFTLADNQTTSHVRSLRSYV
NIWIDTHAIDKYSRVIFPGAYTLFNIIYWSIYS
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atgagaccagcatttggaggaccgcctataccagtcggggtagatgttcaggttgagagc
cttgacactatctctgaggttgatatggacttcactatgactctttatctgagacattat
tggaaggatgagcgcctatcctttccaagcaccaacaaccagagcatgacctttgacagt
aggctggtgaagaagatttgggtgcctgacatgttctttgttcactcgaaaagatctttc
atccacgacactaccacggacaacgtgatgctgcgagtttatcctgatggaaacgtgctc
tacagtctacgagtaacagtcactgccatgtgcaatatggacctcagtcgtttccccctg
gacacacaaacctgctcactcgagatagagagctatgcatacactgatgatgacctcatg
ttgtactggaagaaagggaatgagtcattaaacacagatgacaggatctctctgtcccag
tttctcatccaaaagtttcacacaactacaaagctggctttctacagcagcacgggctgg
tacaataggctgtacatccacttcaccctccggcgccacatcttcttctttctgctgcag
acatatttccctgccacgctcatggtcatgctgtcctgggtgtcgttctggatcgatcgc
agggccgtgcctgctcgagtacctttaggtatcactacagtccttacaatgtccactatc
atcactggtgtcaatgcctccatgccacgtgtgtcctacatcaaagcagtggacatctac
ctttgggtcagctttgtgttcgtgttcctctctgttattgagtatgcagctgtcaactac
ctgaccaccgtgcaggagcgcacagagaggaagctccgagagcaattaccctgcacatgt
ggtatagcacacccaaatgagcacatgatggtgactactgcctatagtgatgtggatcaa
agcacaacagggaactatgggatgccagacaacgaagtgagacaagagaggatctttgct
cagttcacattagcagacaatcagaccaccagtcacgtgaggagcttaagaagctacgtc
aacatctggatagacacccacgccatagacaagtactcaagggtgatttttcctggagca
tataccctcttcaacatcatctactggtccatctactcctaa
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