Ictalurus punctatus (channel catfish): 108270172
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Entry
108270172 CDS
T04658
Symbol
pals1a
Name
(RefSeq) protein PALS1
KO
K06091
MAGUK p55 subfamily member 5
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
108270172 (pals1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
ipu04990
]
108270172 (pals1a)
Domain-containing proteins not elsewhere classified [BR:
ipu04990
]
PDZ domain-containing proteins
MAGUK family proteins
108270172 (pals1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Guanylate_kin
L27_N
PDZ
SH3_2
PDZ_6
PDZ_2
SH3_1
L27
MMR_HSR1
CSN4_RPN5_eIF3a
SH3_9
Motif
Other DBs
NCBI-GeneID:
108270172
NCBI-ProteinID:
XP_017332070
Ensembl:
ENSIPUG00000013563
UniProt:
W5UGY3
LinkDB
All DBs
Position
9:complement(6297481..6334476)
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AA seq
703 aa
AA seq
DB search
MQNLSLISLASLAHTFPREPHTYIMTTSHMNGHVSESEDRAAGTSEAPDSSGHWHREMAV
DCPGELGARTLPVRRSAQLERIRQQQEDRRRREEEGRNRQELDVNSSMRLKKLAQNPKVG
IDNPTFEPLEGPGMSLVQLQGFGGAPRLLELEELLMSLKQVQHCLGDAQSQEDVELVLQL
VQKPDFQKAFNIHNAVALHMNQPSPPFPLTDRAQNLVHEVQAMLHNSSQKEGLDLSTLLK
SPHMLALMLAHDSVAEQEMQLEPVGPLDSPCETLTQWGGETVRIVRIEKAKDIPLGATVR
NDMDSVIISRIVKGGAAEHSGLLHEGDEILEINGVEIRGKDVNEVFDILAEMHGTLTFIL
IPSPNTKPPPIKETVVHVKAHFDYDPSDDPYVPCRELGLCFQKGDILHIISQDDPNWWQA
YRDGDEENQPLAGLVPGKTFQQQREAMKQTIEEDKEPEKSGKLWCAKKNKKKRKKLLYNA
NKTDDYDNEEILTYEEMALYHQPANRKRPIALIGPPNCGQNELRQRLLSSEPDRFGGAVP
HTTRNRRDGEVNGRDYHFVSRQAFEMDSAAGKFIESGEFEKNLYGTSTDSVRQLINSGKI
CLLCLHTQSLKVLRSSDLKPYIIFIAPPSQERLRALLAKDNKNPKPEELRDIIEKAREME
QNFGHLFDAAIVNTDQDKAYQELLRLINKLDTEPQWVPSSWLR
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgcagaacttgtccctcataagccttgcatctctcgcacacacctttccacgtgaacct
cacacctacattatgaccacctcccacatgaatggccatgtaagtgagtcagaagacagg
gcagcaggcaccagcgaagccccggactcttctggccactggcacagggagatggctgtg
gactgcccaggtgaactgggagctcgcacgttgcctgtacggcgcagcgcccagctggaa
cgcattcgccaacagcaggaggaccgcaggagaagagaagaggaaggtcgtaaccgtcaa
gagcttgatgtcaactcctccatgcgcctcaagaagctggcacagaaccccaaggtgggc
attgacaaccccacctttgagcccttggagggtcctggcatgtcactagtgcagctgcag
ggcttcggcggggcaccacgactattggaactggaggagttgctgatgtctctgaagcag
gtacagcactgtctcggtgatgctcagagtcaggaggacgtggagctggtgttgcagctc
gttcagaagcctgactttcagaaggccttcaacatccacaatgctgtggcactacacatg
aaccagccaagtcctcccttccccctcacagaccgtgcacaaaaccttgtacatgaggtc
caggccatgctgcacaacagttcacagaaagagggtcttgacctaagtactttgctcaaa
agtcctcacatgctggcacttatgctggcccacgacagtgtggctgagcaggagatgcag
ctagagcctgtgggtcctcttgatagcccatgtgagacccttacacagtggggaggtgag
actgtcaggattgtacgtatcgagaaggccaaggacatcccgctgggagccacggtgagg
aatgacatggatagtgtgattattagtcggattgtgaaaggaggggcagcagagcacagt
ggactgctccatgaaggtgatgagatattggagatcaacggggtcgagatccgtggcaaa
gatgtcaatgaagtgtttgatatcctggcagagatgcacggcacattgacctttattctg
attcccagcccaaatactaaacctcctcccattaaagagactgtggtgcatgtgaaagca
cattttgactatgacccttctgatgacccgtatgtaccatgccgggagttgggtctctgc
tttcagaagggggacattttacacatcatcagccaggatgaccccaactggtggcaggct
tacagagatggagatgaagaaaatcagcctctagccgggctggtgccaggtaagacattt
cagcagcaaagggaagctatgaaacaaacaatagaagaagataaggagcctgaaaaatca
gggaagctgtggtgtgcaaaaaagaacaagaagaaacggaagaaactgctgtataatgca
aacaagacagatgactatgacaatgaggagattcttacctatgaggagatggcactgtac
caccagccagccaatcgcaagcgccccattgctctgattggtcctccaaactgtgggcag
aatgagctgagacagagactgctgtctagtgagcctgaccggtttggaggtgctgttcct
cacaccacacggaaccggagggatggtgaagtgaatgggcgtgactaccactttgtgtca
cgccaggcctttgagatggattctgcagcagggaagttcattgaatcaggagagtttgag
aaaaacctgtatggcaccagcacagattctgtgcggcagctaatcaatagcggcaaaatt
tgccttctttgtctgcacactcagtctttgaaggtattgcgcagctctgacctcaagccc
tatattatcttcattgcaccaccctcccaggaacgactgcgtgccctcttagcaaaagat
aacaagaacccgaagcctgaggagctgagggacataattgagaaagcaagggagatggag
cagaactttggccacttgtttgatgctgcaattgtgaacacggaccaggacaaggcttat
caggagctgttgcgcctcatcaacaaactggacacagagcctcagtgggttccttcatct
tggctgcgctga
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