Ictalurus punctatus (channel catfish): 108270245
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Entry
108270245 CDS
T04658
Symbol
jmjd1ca
Name
(RefSeq) probable JmjC domain-containing histone demethylation protein 2C
KO
K11449
jumonji domain-containing protein 1C [EC:1.14.11.-]
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ipu03036
]
108270245 (jmjd1ca)
Chromosome and associated proteins [BR:
ipu03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
108270245 (jmjd1ca)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tudor_KDM3B
PWWP_KDM3B
DUF7030
JmjC
FYVE
zf-UDP
C1_2
Motif
Other DBs
NCBI-GeneID:
108270245
NCBI-ProteinID:
XP_017332208
Ensembl:
ENSIPUG00000023850
UniProt:
A0A2D0RNX6
LinkDB
All DBs
Position
9:14991382..15062912
Genome browser
AA seq
2604 aa
AA seq
DB search
MELELVGRRFLCVSGGEERELGGVARWGWRAGLIRAVTSRHTDSPTLAVCVEWDGEPAAE
CRWRRLREEWEVFVLEHELVWAKRNSTSQENSSPQPALAFQPLTGQAQVGGVAVVEFLSD
RELEFYTETEELRPYEGEVDGRSSVLREDLSSHEQLQAWLRHRQFQHILQLGHGSVKGLR
VKVFRPDSKPQWLHGIVSHHDQNSRTMTVLSDQVEEPLSVDPALVHVLVLDDISQLLLVE
ENGTTNCKPHTNKISRITLNAGNRSRNSTETDQVCSLGPVQRKQTELCRENSNCSLTEEN
TDGMREESEADEARADSSKSRINHSERKRRKAVDMEEQDKMDSRSAGLKRPKGNSGSDQS
ECSDTEGSILDSKNLQRKSLKKSPDCKTVNNPAAHLGHGLKAHSSPKSIELSSRQLAENE
CQRVGKVMPLQAHLTNTPCNGVYQTVSSLQCTMGLGCDKAEMEPGDGVMEMEDQSEGASQ
EDCEAVSALLASQENEQLVSLETACVLLHTSPPECEGVEGEQEIPPGDPEVRISALTCPE
VITPSCDSAETVEEEPRVALTHSPTVLCNTKVDSAKVVKSSQSPGATSPRHDAALVSEIT
HKTTVRLSPCSSLEVISKPPEITEVTRLKCNASPQAAKFEERSLPSKVSTDKVLMGFKST
HGSKATSTPTLHQHNAPSPSKTDTQAQSRTPPQNIAHNPNHMPSTDKPTKSPLIIDRNEP
FTVYRDPALVRRELESRSTYVQPPHTPPNLHSKHHLKSPSPSSSSPGLTSTTSHTKIMSP
AAHLSPLPLPSQSPLCSTHPSIPHPHLLPSLLPGLPPPSALLAGHARLGPLGLPHHPLTL
QATQSLLGQGPGTASLAPMGLYPVLWPPFPNGVHGYGLGIPGSKWTPSETASMSEASLRR
NTPSPWVPQTSPVTSAESQGLRLPLPVRPSSAEPQRPSRSAQPSTPTSKSTEEPERRAFT
ETQSPIHVPLKVEQERIRAVVGKNGHTSHSTVTESPSARSKQPQLVYDLTGDRTSCYQEE
SRRILQESIEVAPFTAKLSSDREPYPKSPTPSLHFKEREKEQQREREMHMFRHSVPPRLQ
SAQPSPTLTQNSYYTPAAGSVENKASARRAPPNKELYERLSSPNTAASVLSSPSTQSTAK
ARPPPLIKRNPEKEEGLLGKITEQLISKAISTDPLEVSSMERNGSSTSLISVSSSSSSSS
SSSSSSRVVTSLHRAPIFHPPALPIVMSKEAGQGRLSPPTLTPIQPMGLSGKGQNQHRPP
TLMPELRHGAVAGKRVAPEPISIVNKGYDLQRGGVVHNRERVVSGHTPNGGLVNTQAATA
SVIVRSSGYMHTPVNHTITERLLSQVQCDHMRTLESLPSTHLKDGYVQCKRGILWTPVDT
VHPVNMVALKQDNTPLNMAKNMSTHFSNCGVKYSVNVDTPHSRRDLVSEQCEKEKEDVGK
VAQPKVNLSCCPPRGIPHVKKRRAGLAALEPRQNMHAVQPLHTTDTLNPTKSRYTCTTHT
MNSKCTAHTLDQDKESIFNPSPSKYPRLAPEVTGVVANKPGSVAKVQPLSPSAHTNQPAQ
SGQNNYHKLKKAWLTRHSEQDRGSVTSETAGGSTTLTTTTTVSLPIKQEVNRLEDKWPIQ
EGKELFLDNRKFKTLDRKCLVEDRKSNTEDKKTPLTGDNKVTLEDVKPTMDRNFNLQSKK
SNFQKLCINLRKPNPADIKIEKDNHGEKRIFQSRFESESGGDSSNESECHKSNPGSIHQP
KPAFKKKQNDQKKQRGENEREGEEEEGEEDEGKLNGTIQTTKEKSQHRLPSNGIPRSVLK
DWRKVRKLKQSGEAFLQDDSCAEIGANVQKCRECRLDRSRKAQEPVISPVFCRFYYFRRL
SYSKNGVVRVDGFSVVEDTDEEAVRVWMAGFEDEEEDKQREMELDTAKYILTLIGDKFCQ
LVKTENTAITWVKKDTQVMWKRAVRGVREMCDACEATLFNMHWACHKCGFVVCMDCYKAR
EKKSAKDKELYAWVRCVKNQPHDLKNLMPTQIVPERVLADLQSAMHSIRREYGIPSQCSC
FGSSAFLSRSTINGLLQLSERRQYDLKSQQRNQQKSAQNTAHKISTERRGKLECDDMENL
GRKSGSPEQGSTLRDLLTSTAGKLRLGSAGPGIAFAPVYNNTDQTVQKARMPNLLDDIIA
SVVENKIPASKMTKLGLNQDLLTEEEEELALEEVKPIQIPSADPHNSVPHDWIGNNRLLW
LKDHRHLGNQRLFKENWTQEQPVLVSGLHKSLNASLWKPEHFSREFSALHSDFYNCRDGS
IINTCVKEFWDGFEDVSKRTKSAKGDHAVYRLKDWPSGEEFLALMPSRYEDIMRALPVPE
YTGPDGALNLASRLPSFFIRPDLGPRLCCAHGVTACPEQDFGTSNLHVEISDTMSILVYV
GVAKGNGALSKSGVLKLLEREDLDESAKKRLRDPDETPGALWHIYLSKDLHKIQEFLQTV
TVERAEADAEADSEAELENEADPLREGCWYLSPKLRQRLLDEHGVESRTLLQFYGDTVII
PAGALHQVMNLHSCIQVNVDFVSPEHAHNSYFLTQELRPLKDQVNYEDKLQVKNIFYHSV
KDAVAALSRHLKEQSTEEVKEEEC
NT seq
7815 nt
NT seq
+upstream
nt +downstream
nt
atggagctggagctggtgggtcggcgcttcctgtgcgtgagcggcggagaggagcgcgag
ctgggcggcgtggcgcgctggggctggagagccggactcatccgcgctgtcacaagccgc
cacactgacagcccgactctagctgtgtgtgtggagtgggacggcgagccggcagcagag
tgtagatggaggaggctcagggaggagtgggaggtgtttgtgctggaacacgagctggta
tgggccaagaggaacagcacctcacaggagaacagctctccacagcctgcactggctttc
cagcccctgactggccaagcgcaagtgggcggagtagcagtggtggagttcctgtcggac
agagagctggagttctacacagaaacagaagagctgcgtccgtatgagggggaagtggat
ggcaggagctcagtgctgagagaagatctttcaagccatgagcagctccaggcttggctc
agacatcggcagttccagcacattcttcagctaggacatggcagtgtgaagggcctcagg
gtaaaggtgttcagacctgattccaaacctcagtggctccatggtattgtcagccatcat
gatcagaacagcagaaccatgactgtcctgagcgaccaggtagaagagcctctgagtgtg
gacccagcgcttgtgcatgtgctggttctggatgacattagccagttgttattagtggaa
gaaaatggcacaacaaattgcaaacctcacactaacaagatcagcaggatcaccctgaat
gcaggaaacaggtcaagaaacagtacagaaacagaccaggtgtgtagcttggggccagtg
cagaggaaacagacagagctgtgcagagagaactccaactgcagtctgacagaggaaaac
acagatgggatgagggaggagagtgaagctgatgaagcgagagcagattcctcaaagagt
aggatcaaccatagcgagaggaagaggaggaaagcagtggatatggaagagcaggacaaa
atggacagtagaagtgctgggttgaagaggccgaaaggtaacagtggctctgaccagtca
gagtgcagtgatacggagggcagcatcttggactcaaaaaacctacagagaaaatcttta
aagaagtcacctgactgcaagacagtcaacaatcctgcagcacatttaggacatggcctg
aaggctcactcgtctcccaaaagcatagaactttcttctagacaattagcagagaatgaa
tgccagagagtagggaaagtcatgcccttgcaggctcatctaaccaacacaccctgcaat
ggcgtgtaccaaacagtcagttcactacagtgcactatgggactgggctgtgataaagca
gagatggaaccgggagatggagtgatggagatggaagaccagagcgaaggtgcatcacaa
gaggactgtgaagctgtctctgccctactggcatcccaagagaatgagcagctagtttcc
ttggagactgcatgtgtgttgttgcacacgtcaccaccagagtgcgagggtgttgagggt
gagcaggagattccaccgggtgacccagaggtcaggatttctgctttgacatgcccagaa
gtcattacacccagttgtgactcagcagaaacagtggaagaagagccgagagtagctttg
actcactctcccactgtgctttgcaatacaaaggtagattctgctaaagtagttaagtca
agtcagtcccctggagctactagtcctagacacgatgctgctcttgtctcagaaattacc
cacaagaccactgtacgcctaagtccttgttcctctcttgaggtgatttccaagccacca
gagattacagaggttaccaggctgaagtgcaatgcctctcctcaagctgccaaatttgaa
gagcgcagtttgccctcaaaagtcagtacagataaagttctcatgggctttaaaagcaca
catggttccaaagcaacctctaccccaacccttcatcaacataatgcaccctctcctagc
aaaacagatacacaggctcaatcaaggaccccacctcagaatattgcccataaccctaat
cacatgccttctaccgataaaccaactaagagtccactgatcattgacagaaatgagcct
ttcacagtgtatcgagacccagcacttgtgagaagagaactggagagccgttctacctat
gtccaacccccacacaccccacccaacctccattcaaaacaccatctgaagagcccatct
ccctcctctagctcccccggccttacctccacgacatcccacaccaagatcatgagtcct
gctgcacacctctcacctcttcccctcccttcccagtctcctttgtgttctactcacccc
tccatcccccaccctcacctgcttccttctctcctgcctggtttgcccccaccctcagca
ctcctggctggacatgctcggctggggcctctgggtctcccccaccacccattgaccctg
caggcgacccagtctctcctgggccagggaccaggaactgcttccctggcaccaatgggc
ctgtacccagtcctctggcccccttttcctaatggggtacatggctacggtctgggaata
ccagggtccaagtggacaccctcagagactgcaagcatgtctgaggctagcctgcggagg
aacacacctagcccctgggtccctcagacttctcctgtaaccagtgcagaaagtcagggt
ttgcgactccccctacctgtacggccctcaagcgctgaaccccagagaccatccaggagt
gcccagcccagcacccctacctctaaaagcacagaggaaccggagaggagggcttttaca
gagacacaaagccccatccacgtaccgctgaaggtggaacaggagcgtattagggcagta
gtgggaaagaatggacacacatcccactctacagtcacagagtcaccttctgctcgctcc
aaacagccccagttggtgtatgaccttacaggtgaccgcaccagctgttaccaggaggag
agccggcgcattctgcaggagagcattgaagtagcaccattcacagccaaactcagctca
gacagagaaccctaccctaaaagccctactccttcactgcatttcaaagagagagagaaa
gagcaacagcgtgagagagagatgcacatgttcagacatagcgtgcctcccaggttgcag
tcagcccagccttcaccgacactcacgcagaatagctactacaccccagcagctggcagt
gtggagaacaaggcttctgcgcgtagagctccacccaacaaggagctgtacgagagactg
agttccccaaacactgctgcctccgtcctctcttcacctagtacacaaagcacagctaag
gctagacctccacccctcatcaagcgcaaccctgagaaagaggaaggtctcctgggcaag
attacagaacagttgatctcaaaagctatctccacagacccattggaagtcagtagcatg
gagagaaacggctcctccacttctctcatttctgtctcttcttcttcttcttcttcttct
tcttcttcttcttcttctcgtgttgtaacctcactgcacagggcccccatattccacccc
ccagccttacccattgtgatgtctaaagaggcagggcaaggtaggttgtcaccacctacc
ctgacacccatccagccaatgggcttatcgggaaaaggtcagaatcaacacaggccgccc
acattgatgcccgagctcagacacggagcggttgctggaaagagggtggctcctgagcca
atatccattgtaaacaaaggttatgatttgcagaggggtggtgttgtgcacaaccgagaa
agagtggtaagcggtcacacgcccaatggaggattggtgaacacacaggctgccactgct
tctgttattgttcgttcttctggttacatgcacacacctgtgaaccacaccatcactgaa
aggttgctttcccaagttcagtgtgaccatatgcgaacattagaaagtttgccaagcaca
cacttgaaggatggctatgttcagtgtaagaggggcatcctgtggacccctgtcgacact
gtacaccctgttaacatggtcgctttaaaacaggacaacacacctttgaacatggctaaa
aatatgagtactcatttttccaactgtggggtgaaatattctgttaatgtagatacaccg
cactcaagaagagacttagtatccgagcagtgtgaaaaggagaaggaggatgttggtaag
gtagctcagccaaaggtgaatctctcctgttgtccccctagaggcatcccccatgtaaag
aaacgcagagctggactagctgctttagaaccaagacaaaatatgcatgcagtccagccc
ctgcacactacagacactttgaaccctaccaagagtagatacacttgcactacacacact
atgaattccaaatgcactgcacacactctggaccaagataaagagtctatattcaatcct
agcccatccaaataccccaggttagcccctgaggtcactggggttgtagccaacaaacca
ggctcagtggcaaaagttcagcctctgtctccttcagcccatactaaccaacctgcccag
tctggtcagaacaattaccacaaactgaaaaaagcttggcttacccgtcactctgagcag
gacagaggtagtgtcacctcagagacagcagggggcagtaccacactaaccaccacaacc
actgtctctctgcccatcaaacaggaggtgaatagactggaggataaatggcccatacag
gagggcaaagaactttttctggataataggaaatttaaaactctagacaggaaatgcctt
gttgaagataggaagtccaacacagaggataaaaaaacacctctcacaggggataataaa
gttactttagaagatgtaaagcccaccatggatagaaatttcaacttacagagtaagaag
tctaactttcagaaactatgcattaatttaaggaagccaaacccagccgacataaagata
gagaaggataatcacggggagaaacggatctttcagtcccgctttgaaagtgagagtggg
ggggactcgagcaatgaaagcgagtgtcacaaatccaacccagggagcattcatcagccc
aaacctgcattcaaaaagaagcagaatgaccagaaaaagcagaggggtgagaatgagaga
gagggggaagaggaagagggagaagaggatgaggggaaacttaatggcacaatccagact
accaaagagaaatctcagcacaggctgcctagcaacggcattcctcgttcagtgctaaag
gactggaggaaggtaaggaagctgaagcagagcggcgaggccttcctgcaggatgactcg
tgtgcagagattggagctaatgtgcagaaatgccgggaatgtcgattggaccgctcacgc
aaggcccaagagcctgtcatttcacctgtcttctgtcgcttctactacttccgcagactg
tcatacagcaagaacggagtagtgcgtgtggacggcttctctgttgttgaagacactgat
gaagaagcagtgcgagtgtggatggcgggctttgaggacgaagaggaagacaagcaaagg
gagatggaactggacaccgccaaatatattctcacgctcataggagacaagttttgtcag
cttgtcaagacagaaaacactgctatcacatgggtcaagaaagacacccaggtaatgtgg
aagcgagcggtgagaggtgtgagagagatgtgtgacgcatgtgaggctactctgtttaat
atgcattgggcctgtcacaaatgtggctttgtggtgtgcatggactgctacaaagcccgt
gagaagaagagtgccaaagataaagagctgtatgcctgggtgaggtgtgtgaaaaaccag
ccccatgacctgaagaacctaatgcctactcaaatagttccagagagagtattagcagat
ctacagagtgccatgcactctataaggagagaatacggcatcccctctcagtgctcttgc
tttggcagtagcgccttcctctccagatccaccatcaacggcctcttacagctttctgag
agaaggcagtacgacttgaaaagccagcagcgaaatcagcagaagagcgcacagaacact
gctcacaagatctccacagagagaagaggaaaactggagtgtgatgatatggagaatttg
ggcaggaagtcaggcagcccagagcagggctccactttgcgtgacctcctgacatccaca
gctggaaaactgcggctgggatccgccgggcctggaatcgcatttgcaccagtttataac
aacaccgatcagactgtccagaaagcacgcatgcccaacctcctggatgacattattgcc
tcagtagtagagaacaaaattcccgcctcaaagatgaccaaacttgggttgaaccaggat
ttgctgacagaggaggaggaagaactagcgctggaggaggtgaagcctattcaaatcccg
tcggctgacccgcataacagtgttccacatgattggataggcaacaatcggttgctttgg
cttaaagatcatcgtcacctaggcaaccaaagattgttcaaagagaactggacacaagag
cagccggtactggtctctggcctgcacaagagtctgaatgccagtctgtggaagccagaa
cactttagcagagaattctcagcactccacagtgatttctacaactgtcgtgatgggagc
atcataaacacctgcgtcaaggaattctgggatggatttgaggacgtgtcaaagagaact
aaatctgctaaaggtgatcatgctgtatacagactgaaggactggccatcaggggaagag
ttcctggcactcatgccatccaggtatgaagatattatgagggctttgccagttccagaa
tacactggtccagatggcgccctcaaccttgcctctcgccttccatcgttcttcatccgt
ccagatctgggtcctcgactctgctgtgcacatggtgtgacagcatgcccagagcaggac
tttggaaccagcaatctgcatgttgaaatctctgacactatgagcattctggtctacgtg
ggtgtagccaagggcaatggagcgctctccaagtcaggagttttgaaactcttagagaga
gaggatctagatgagagtgcaaagaagaggctgagagatcccgatgaaactccaggcgca
ctgtggcacatctacctgagtaaagatctccataagatccaggaattcctccaaacggta
acagtggagcgtgctgaggcagatgctgaggctgactctgaggcagaattggagaatgag
gcagaccctcttcgtgaggggtgctggtacctaagcccgaagctgcggcagaggcttctg
gatgaacacggtgtggagagtcgcacactgctacagttctacggagacactgtgattatt
cctgccggagctctgcaccaggtgatgaatttgcacagttgcattcaggtgaatgtggac
tttgtgtcccctgaacatgctcacaactcatatttcctgacccaggagctccgccctctc
aaagaccaagttaattatgaggacaaattacaggtaaagaacatcttctaccactcagtg
aaggacgctgtggccgctctgagccggcacttgaaagagcagagcacagaggaggtgaag
gaggaagaatgctga
DBGET
integrated database retrieval system
