Ictalurus punctatus (channel catfish): 108270414
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Entry
108270414 CDS
T04658
Symbol
hmbox1a
Name
(RefSeq) homeobox-containing protein 1a isoform X4
KO
K24885
homeobox-containing protein 1
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ipu03000
]
108270414 (hmbox1a)
Transcription factors [BR:
ipu03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
108270414 (hmbox1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HNF-1_N
Homeodomain
Homeobox_KN
HTH_3
AbiJ_NTD3
HTH_31
DUF494
CUT
HTH_37
NOC3p
Motif
Other DBs
NCBI-GeneID:
108270414
NCBI-ProteinID:
XP_017332571
Ensembl:
ENSIPUG00000010621
UniProt:
A0A2D0RQW8
LinkDB
All DBs
Position
9:2977707..2987773
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AA seq
414 aa
AA seq
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MSHYTDEPRFTIEQIDLLQRLRGSGMTKQEILCALDTLERLEREHVQKFGPRHSYAGATR
GVNSHGSSSSVAPSSTAPTLSSSASVATQTVFHGGTPSPSPTSYDTSPPPTIAVPMGVVA
PAAQNGRDCLAPVSNGKHSPPQYPVSARAFGFEPAEEEVDIDDRVEELMRKDSNIIKEEI
KAFLGSRRISQAVVAQVTGISQSRISHWLLQQGSDLSEQKKRAFYRWYQLEKTTPGATLA
MRPAPMALEDIVEWHQSAPPINCSPGSFRLRRGSRFTWRKECLAVMESYFNDNQYPDEAK
REEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANIEAAILETHGIDVQ
SPGGQSNSDEIDGNDFSEPGAEPGLGTVPTLISGWLEHPMGAGLGSSSGGGASS
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atgtcacattacaccgacgagcctcgcttcaccatcgagcagatcgatttgctgcagcgg
ctgcgcgggagcggcatgacgaagcaggagatcctgtgcgcactggacacactggagcgc
ctggagcgcgagcacgtgcagaagttcggcccgcgccactcctacgcaggagcgactcga
ggagtcaacagccatggcagctccagttcggttgctccgtccagcaccgctcctactctg
tcctcgtccgccagcgtggccacgcagaccgttttccacggcggcactccgtcgccgtct
ccaaccagctacgacacctctccacccccgaccatcgccgtgcccatgggcgtggtagcg
ccagcggctcagaacggccgtgactgcttggcgcccgtcagcaacgggaagcactcgcct
ccccagtaccccgtatccgctcgggccttcggcttcgaaccggctgaggaggaagtagac
atcgatgaccgggtggaggagctcatgagaaaggatagtaatataattaaagaggagatc
aaggccttcttagggagccggagaatttcgcaagccgtcgtcgcccaagtcacaggcatc
agtcagagtcggatctcccactggctcctgcagcagggttccgatctgagcgagcagaag
aagagagctttctaccggtggtaccagttggagaagaccacgcccggagccactctggct
atgagacccgcccccatggcgctggaggacatcgtagagtggcaccagagcgctccaccc
atcaactgcagccccgggagcttccgtctgcgccgcggcagccgcttcacctggaggaag
gagtgtctcgccgtcatggagagttactttaacgacaaccagtatcctgacgaggccaag
cgggaggaaatcgccaacgcctgcaatgctgtgatacaaaaaccaggaaagaagctttcc
gatctagagcgggtcacgtctctgaaagtgtacaactggtttgctaaccggcgaaaggag
attaagagaagagccaatatagaagcagcaatcctggagactcatgggatcgacgtgcag
agtccaggcggtcagtccaacagcgacgagatcgacggcaacgacttcagcgagccgggc
gccgagccggggttagggacggtaccaactttgatctctggttggttggagcatcccatg
ggggcggggctgggctcaagcagtgggggcggggcatcgagctga
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