Ictalurus punctatus (channel catfish): 108270552
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Entry
108270552 CDS
T04658
Symbol
cdhr5a
Name
(RefSeq) cadherin-related family member 5 isoform X1
KO
K16505
cadherin-related family member 5
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ipu04515
]
108270552 (cdhr5a)
Cell adhesion molecules [BR:
ipu04515
]
Cadherins
Cadherin related
108270552 (cdhr5a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_CELSR2_9th
Glycophorin_A
Motif
Other DBs
NCBI-GeneID:
108270552
NCBI-ProteinID:
XP_017332858
Ensembl:
ENSIPUG00000010989
UniProt:
A0A2D0RQS1
LinkDB
All DBs
Position
10:26613991..26621183
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AA seq
700 aa
AA seq
DB search
MERKYKLKSLNTAFSCMIVFLLHKSCLAEKICSVPSDPVTIKENNTIDAVVVHINTTTKN
VTLTLTENPDNAFDLRGLDLIVKKRLDFETLLNPEALTVQIRCNKTGSKSITLSVLVQVE
NINDNPPSFAQSKYILDVNELTPINASVAQIEAKDDDSGVLYYALEPALNPYFRLENMYK
PNILVNKTLDFDVIQQVTLTLYVQDTPPFSPPGQISFKATTTIIINIKDIDNRPPWFQPC
TRISIGSAKICLSVGYKGRVNLTERQEGPLQLNPGPIYARDGDKSRNEEISYKIVRGNED
NIFQIDENTGNITMLKPADIAGPVSLTVLASQVSNRDQFASTSVNIEVMKKSRNPPKFER
ERYEAYVYSNSGPENMVLRDRTSNRPFRVRARDDDFANGINPDVRYEVQYSSYVNITTDG
FVLLKKPVRTDSFALQVRAVDVSTGESGTAALSVVVLPPVGVQSPSEGYRAGDMALLGFV
MAALLVLCLIVIGYLISRLKKRNPDTLKLSECLGPCLQHTQSTDGLRPRDSMQFTNDGFL
NEAGMSRLAMRRADKRGKNQDAAPKWRMRVTPRERQKYCNSCGMRVHSNHVHRSSPALHP
KAQGAKDQVRSILTKERRKDGQKMVWFKESEDSSDIEVEIIPDDIGLKHEEENEESSSLA
LKTSDMELSELTMMNIQDFDKQKENVSDHREPPDPDKTDQ
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atggaaaggaaatataagctaaaatccctaaacaccgccttcagttgcatgatagtgttc
ctccttcacaaatcctgccttgctgaaaaaatttgttcagttccctcagaccctgtgact
attaaagagaacaacacaatcgatgccgttgttgtccatattaacacaacaacaaagaac
gtcacactgactctcaccgagaacccagacaatgcttttgacctgaggggattggatctg
attgtgaagaaacgcctggactttgaaactctgttaaatcctgaggcgctcacagttcaa
atccgctgcaataaaacaggatccaaaagtattactttgtccgtgcttgttcaagtcgaa
aacatcaacgacaaccctccttcatttgcccagagtaaatacattctagatgttaatgag
ctcacacctattaacgccagcgtggcccagattgaagcgaaagatgatgattcaggcgtt
ttatattacgccttggaacctgctctgaacccatatttccggctggagaacatgtacaag
ccaaatattctcgtcaacaagactttggattttgacgtcatccagcaggtgacattgacc
ttatatgtgcaggatacgccaccgttttcaccaccaggccaaatctccttcaaagccacc
acgacgattataatcaacataaaagacattgacaaccgtccgccctggttccagccatgc
acgagaataagtatcggttctgccaaaatctgcctgagtgttgggtataagggccgagtc
aacttaacagaaagacaggagggaccactacagttgaatccaggtccgatctacgcaaga
gacggagacaaaagcagaaatgaagagattagctataaaattgttagaggaaatgaagac
aacatatttcaaatagatgaaaacactggaaacataaccatgctaaaaccagcggatatc
gcaggcccagtatctctcacagttttggcttcccaggtgtcaaaccgtgaccagttcgct
tccacttcagtcaacattgaggtaatgaaaaagagcaggaacccaccaaaattcgagagg
gagcgctatgaggcgtatgtttacagcaactcaggccctgagaacatggtgctcagggac
aggacttcaaatagacctttcagagtcagagccagggatgatgactttgcaaatggaata
aatcctgatgtacgatatgaagtacagtacagcagttatgtcaacataaccacagacgga
tttgtgcttctgaaaaaacctgttcggaccgactcttttgctttacaggttcgagctgtc
gatgtatcaactggtgagtcggggacggcggctctgtccgtggttgtcctaccacccgtg
ggagtccagtcgccctcagagggataccgtgctggagatatggccttgctgggcttcgta
atggccgccttgttggttctctgcctcatcgtgattggctatctcatctcccgtctgaag
aaaaggaatccagacacgctcaagttatcagagtgtttaggtccatgcttgcagcatact
cagtccactgacgggttacggccaagagacagcatgcagttcaccaatgacggtttcctg
aacgaagcaggcatgagcaggttggcgatgaggagagcagataagagaggcaagaatcag
gacgcggctccgaaatggagaatgagagtgacaccacgtgagaggcaaaaatactgcaat
tcctgtggtatgcgagtccactcgaaccatgtgcaccgcagtagtccagctctccacccc
aaagcccaaggcgctaaagaccaagtcagatccatcctaactaaagagagaaggaaggac
gggcagaagatggtgtggtttaaggagagcgaggattcctcagacatcgaagtggagatc
attcctgacgacataggacttaaacacgaagaagagaatgaagaatcgtcttctctggca
cttaaaaccagtgatatggaactgagtgagctgactatgatgaacatccaggactttgac
aagcagaaggaaaacgtttctgaccaccgagagccaccagacccagataaaacagaccag
tga
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