Ictalurus punctatus (channel catfish): 108270590
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Entry
108270590 CDS
T04658
Symbol
limd1a
Name
(RefSeq) LIM domain-containing protein 1 isoform X1
KO
K16682
LIM domain-containing protein
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108270590 (limd1a)
03036 Chromosome and associated proteins [BR:
ipu03036
]
108270590 (limd1a)
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
108270590 (limd1a)
Chromosome and associated proteins [BR:
ipu03036
]
Eukaryotic type
Sister chromatid separation proteins
Aurora kinases
Regulators of Aurora kinases
108270590 (limd1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LIM
zf_RING_Vps8
DUF6487
Motif
Other DBs
NCBI-GeneID:
108270590
NCBI-ProteinID:
XP_017332913
Ensembl:
ENSIPUG00000020545
UniProt:
A0A2D0RQX5
LinkDB
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Position
1:complement(24771412..24801754)
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AA seq
569 aa
AA seq
DB search
MDKYEDLGLEASKFIEDLNMYEASKDGLFRMKRDAGNNPDFEETRKVFASKMTKIHMQKH
QEEMARNTLPERLNGGHVKVADGTFYTKDRPPISSSRHEAASKPPILSGPSTCYEGHKHH
PLSPHDARVFSYGSNHDLLRSCHNPSVELGNSYHQTMPFPTSPSGTWASKNNPQCQASSP
TLSLSSSAPGSNMNHGATPPLRQSSPCQTLTSTGKLDCFPPSDTDAHGEPDSHHKSSPYV
SPTHHSEPIMSQKTYGDPRHNGVPQSTGTCSAVQLSPIAQSQPETPQPKGQVQCHTRGHS
SPTVSDNLANSTAEPARSDTHSPPQALKLPCHTLHIQPEPGPSAAEIKLEALTERLEKEM
DAQPKADYFGSCVKCSKPVYGASQACQAMGSLYHDSCFTCSACSRKLRGKAFYYVSGKVF
CEEDFLYSGFQQSADKCSVCGHLIMDMILQALGKSYHPGCFRCVICNESLDGVPFTVDTE
NKIYCVKDYHRVLAPKCAACSQPILPSEGSDETIRVVSMDKDYHVECYHCEDCKMELNDE
EGHRCYPLDGHLLCHTCHLKHIESSCPSV
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atggataaatacgaggatttggggctcgaagcgagcaaattcatcgaggacctgaatatg
tacgaggcgtccaaggacggactgttccgcatgaagagggacgcaggaaataacccggac
tttgaggaaaccaggaaggtgttcgcctccaaaatgaccaaaatccacatgcagaagcat
caagaagagatggcgagaaacacccttccagaaaggttaaacggtggacacgtcaaagta
gcagatggcacgttttacaccaaagacagaccacctatcagtagctccagacatgaagct
gcatctaagccacccattctctcaggaccgagcacatgttatgaaggacataagcatcat
ccactcagcccacatgatgccagggtttttagctatggaagcaatcatgacctcttgcgc
tcatgccataatccatcagtggaacttggaaactcttatcatcaaactatgccttttcct
accagtccatctggcacttgggcatctaagaacaatcctcaatgccaggcgtcatcaccc
acgcttagcctgagttcaagcgcacctgggtctaacatgaaccatggagcaactcctcct
cttcgtcagagctcaccatgccaaactttaacatccactgggaagcttgattgtttccca
ccatcagacacagatgctcatggagaaccagactctcaccacaagtcttctccttatgtt
agccctactcatcactctgaacccatcatgtctcagaaaacctatggagacccacgccat
aatggggttcctcaaagcactgggacgtgctctgctgtccagctgtccccaatagcacaa
agccaaccagaaacacctcagcctaaaggtcaagtccagtgccacactcgaggacatagc
agtcctactgtttcagacaacctggcgaactcgactgcagagccagccaggagtgatacc
cacagcccccctcaggcgctcaaactgccatgccacactctccatatacagcccgagcct
gggccgtctgcagctgaaataaaattagaagctctaactgaacgcctggaaaaggagatg
gatgcccagcctaaggctgactacttcggcagttgtgtgaaatgcagtaagcctgtgtat
ggagccagtcaggcttgccaggccatgggtagcctctaccacgacagctgcttcacctgc
agtgcctgcagtcggaagctcagggggaaagcattttactatgtttctgggaaggtgttt
tgtgaagaggattttctgtactctggctttcagcagtcagctgacaaatgcagtgtatgt
ggccacctgatcatggacatgatcctgcaggcactgggcaagtcctaccatccaggctgc
ttccgctgtgtcatctgtaacgagagcctggacggcgtgccttttactgtggacacagag
aacaagatctactgtgtcaaagactaccacagggtccttgctcctaaatgtgccgcatgc
agtcagccaatcctgccctctgaggggtctgatgaaaccattcgagtggtatctatggat
aaagactatcatgtagaatgctatcactgtgaggactgtaagatggagctgaatgacgaa
gaagggcatcgctgttacccactagatggccacttgctgtgccacacatgccacctcaaa
cacatcgagtcaagctgcccgtctgtctga
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