KEGG   Ictalurus punctatus (channel catfish): 108270770
Entry
108270770         CDS       T04658                                 
Name
(RefSeq) RNA polymerase II elongation factor ELL isoform X1
  KO
K15183  RNA polymerase II elongation factor ELL
Organism
ipu  Ictalurus punctatus (channel catfish)
Pathway
ipu03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:ipu00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    108270770
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:ipu01009]
    108270770
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ipu03021]
    108270770
Protein phosphatases and associated proteins [BR:ipu01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     108270770
Transcription machinery [BR:ipu03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Super elongation complex (SEC)
     108270770
    Little elongation complex (LEC)
     108270770
SSDB
Motif
Pfam: ELL Occludin_ELL CC149 Seryl_tRNA_N
Other DBs
NCBI-GeneID: 108270770
NCBI-ProteinID: XP_017333165
Ensembl: ENSIPUG00000016633
UniProt: A0A2D0RT73
LinkDB
Position
10:2761216..2791063
AA seq 627 aa
MAALKEEQCYGLSCGRVSNGSNISVFHVKLTDSALRALEDYQSSKGLSAQPLIRFTGNQG
KISIPQSTSPNDLRTFTFYLSNVGRDNPQGSFDCIQQYISSEGSIQLDCLGGIQDKITVC
ATDDSYQKARQSMAQAEEETRSRGAIVIKPGGRYVGKRVQIRKAAMALSDVAPSRRFSRP
VLISSNMKKSTALPRPLRERLVHLLALKPYRKPELLVRLTKDGLSPQDKDTLDSLLQQVA
NLNNKDNTFTLKDCLFKEVQKDWPGYTEVDQQILKRILVRKLCKPQSSGPVLGENPVSPH
KEQASSSPSQKRTTEDFIDPLASKKPRISHLTSKGSAPVNGKLNSSNGKDSCGLSSAPLP
LLDLSQRLEPLSDVSNDSSHNGRDCEGQEAAVAERLSQTTAITGGSLQKEAVLGSATLAP
GSLAGSKDRSTSPSLHGKSKKSKKRKDKDKSRKKDPEKEKRERKGAEDGDGLKKLYKVTT
SPDLSMMSIPHKSSDLNGMLNSSSIPASSSVMADYLLKYTEIGSQEQRQSYKNDFNAEYS
EYRGLHARIEGITRQFTVLDAELKQLQQGTDQYKTIHNQILQEYRKIKKTNPNYSQERNR
CEYLHNKLAHIKKLIAEYDQQQIQHWH
NT seq 1884 nt   +upstreamnt  +downstreamnt
atggcggcgttgaaggaggagcagtgttacggactgtcttgtggaagagtgagcaatggc
agcaatatctcagtctttcacgttaaacttactgacagtgctttgagagcgctggaagac
tatcagagcagtaagggtctttctgctcaaccactaatacgattcactggaaatcaaggg
aaaatctcaataccccagtccacgagtccaaatgatctgcgaacgtttacgttctatctg
tctaatgtggggagggataatccccagggcagctttgactgcatccagcagtacatttca
agtgaagggagcatacagctggactgcctgggagggatccaggataagattacggtgtgt
gccacggacgactcgtaccagaaggccaggcagagcatggctcaggcagaggaggagacg
cgcagccgcggtgccatcgtcatcaagcccggtgggagatacgtgggtaaacgggtccag
atccggaaagcagcgatggccctttcggacgtggccccatcgcggcgcttctctcgtcct
gtgctcatctccagcaacatgaagaagagtacggcgctgccgcggccactcagggagcgc
ctcgtccacttacttgccctcaaaccctaccgcaagcctgagttgctggtgcgccttacg
aaggacggcctctcaccccaggataaagatactttggacagcctcctgcaacaggtggct
aatctgaataacaaggacaacaccttcacattgaaggactgtttgtttaaggaagttcag
aaggattggcctggctacactgaggtagaccagcaaatcctaaagaggatccttgtacgg
aaactgtgcaagcctcagagcagtggtccagtgctgggggagaatccagtcagcccgcac
aaagaacaggccagtagctctccatctcagaaaaggactactgaagattttattgacccc
ctggcaagcaagaagcccaggatatcacatctgaccagcaaaggatcagcacctgtcaac
ggaaagttgaactcttcaaacgggaaggactcgtgcggtttatccagcgccccgcttccg
ctactggatctatctcagcgtcttgagccgctgtcggatgtcagcaacgactccagccac
aatggccgggactgtgaaggccaggaggcagcggtggctgagaggcttagccaaacaaca
gccatcacagggggctctctgcagaaagaggcggtgttaggctccgcaactttggcgccc
ggcagcctggcaggatcaaaggaccgtagcacctcaccctcgctgcatggcaagtccaag
aaatccaaaaaacgcaaagataaagacaagtccagaaagaaagatcctgagaaggagaag
agggagaggaaaggagcggaggacggtgatgggttgaagaaattgtacaaggttactaca
agtccagacctgagcatgatgagtattccacataaaagctcagatctgaatggaatgttg
aacagctccagtattcctgcatcttcatctgtcatggcagactatttactaaaatacact
gagattggctcccaggagcagcgtcagagctataagaatgactttaacgcagagtatagt
gagtaccgaggactccacgcacgaatagagggtatcacccggcaattcactgtgctggac
gctgagcttaaacagctccaacaaggcacagatcaatataagacaatccacaatcaaata
cttcaagagtatcgcaaaataaaaaagactaatcccaactacagccaagagaggaaccgc
tgtgaatatctccacaacaaactggcacatataaagaaacttatagcagaatatgatcag
cagcaaattcagcattggcactaa

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