KEGG   Ictalurus punctatus (channel catfish): 108270778
Entry
108270778         CDS       T04658                                 
Symbol
lingo3a
Name
(RefSeq) leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 3a
  KO
K23533  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein
Organism
ipu  Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:ipu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:ipu04131]
    108270778 (lingo3a)
Membrane trafficking [BR:ipu04131]
 Endocytosis
  Lipid raft mediated endocytosis
   RhoA-dependent endocytosis
    108270778 (lingo3a)
SSDB
Motif
Pfam: LRR_8 LRR_5 I-set LRR_4 Ig_3 LRR_1 ig Ig_2 LRR_LRWD1 LRRNT V-set LRR_9 EGF1_RECK
Other DBs
NCBI-GeneID: 108270778
NCBI-ProteinID: XP_017333179
Ensembl: ENSIPUG00000016824
LinkDB
Position
10:2886352..2912268
AA seq 604 aa
MAVYPVLGLLGLLLLQITLPICHGQGCPQVCDCVSQRKFVNCQNKHLNSFPNGIPTDTRF
LDLSRNKLRWVEHGDLEAYTHLEDLDLSENLISVLEPNAFSRLLNLRVLCLRANQLKLVP
MGAFSHLANLTDLDLSGNKLVILVDFTFQDLRRLQKLEVGDNDLVYISNKAFLGLTGLQE
LTIERCNLTSISGQALSYLHGLVSLRLRYLNIVSLEEQNFQKLGGLRGLEIDHWPFLEYI
SPYSFQGLNLSWLFITNTNITTVPTGALRNLINLGSLNLSHNPISVLESWALRDLVNLKD
LHLVGTNLMRVQPYGLGGLQQIRLLNLSNNRLVTLEEGSFHSVNTLEMLRVDGNPLSCDC
RLLWILQRRKTLNFDGKFPVCAGPIEVQGKALSAFSDSALLDHFTCQRPKIRNRKLQQIS
AREGQVVSFFCQADGEPTPTIFWISPQRRRITTRSTGRLMVLPEGTLEIHYVQITDSGTY
ICIASNAGGNDTYFATLTVSGLPLDAGLSVNRTYTGDLNDTNLNDTRVFLKFTLDLKTIL
VSTAMGCITFLGVVVFCFLLLFVWSRGRGQHKNNFSVEYSFRKVDGPTTSGGQGGARKFN
MKMI
NT seq 1815 nt   +upstreamnt  +downstreamnt
atggcggtttatcctgtcttgggcttgctgggccttctactgctacagatcacacttccc
atatgccatggccaaggttgtccacaagtctgtgactgtgtatcccagagaaagtttgtg
aattgtcagaacaagcaccttaattcttttccaaatggaattccaactgacacaaggttt
ctagacctcagtagaaataagttgcgttgggtggagcatggtgacttggaagcctacaca
catttggaggacttagaccttagtgaaaatctcatcagtgtgcttgagcccaatgctttt
tcccgcttactgaatctacgtgtgttatgtttgcgtgccaaccagttgaagctggtgcca
atgggtgccttctcacatcttgccaatctcacagatttggacttgagtggaaataaattg
gttattttggtagattttacttttcaggatctgaggaggctccaaaaattggaggtgggt
gacaatgatttggtatatatatcaaacaaggcattcctgggcttgactggtctacaggag
cttaccattgagaggtgcaacctgacctctatctcaggacaagctctttcctatctccat
ggcttggtgtcactacgattacgctacctcaatattgtctcgttagaggaacaaaacttt
caaaagctgggtggtctgcggggtctagagattgatcactggccatttttagagtacatt
tccccatacagtttccagggcctcaatttatcgtggcttttcattaccaacaccaatatt
actacagttccaactggtgccctacgtaatcttattaatttgggcagtctgaatctctca
cacaatcccatttctgttcttgaatcttgggctttgcgtgatctggtcaatttgaaggac
ttacaccttgtgggcaccaacttgatgcgtgttcagccatatggccttggaggtcttcag
cagatacgtttgctcaacctgtccaacaataggttagtaacgctagaagaaggctctttt
cactctgtaaacaccctggaaatgcttcgggttgatggtaaccctctgtcctgtgactgc
cgtctgctatggatcttgcagcgccgcaagacccttaactttgatggcaagttcccagtt
tgtgcaggacccattgaggtacaaggtaaagctctcagcgcattctctgactcagcactc
cttgaccacttcacatgccaacgaccaaaaatccgcaaccgaaaactacaacagatatct
gcacgtgagggtcaggttgtatcatttttttgtcaggcagatggagaaccaactccgacc
atcttctggatttcacctcagcgccgccgcatcactactagaagcactggtcgtcttatg
gttttaccagagggcacattagaaatacactatgtgcaaataacagatagtggaacctac
atatgcattgccagcaatgcaggtggcaatgacacctactttgccacattaactgtcagt
gggctacccttggatgcaggcctttcagtgaatcgcacctatactggtgacctcaatgac
actaatctgaatgacacgcgtgtcttcctaaagttcacactagacctcaagacaattttg
gtctccacagcaatgggttgtataacatttttgggtgtagtcgtcttctgcttcttgctt
ttgtttgtgtggagtcgtggacgtggacagcacaaaaacaacttttcagtggagtactcc
ttcagaaaggtagatggccctacaaccagtgggggccaaggaggggctcgaaaattcaat
atgaaaatgatatag

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