Ictalurus punctatus (channel catfish): 108270814
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Entry
108270814 CDS
T04658
Symbol
elavl1b
Name
(RefSeq) ELAV-like protein 1b isoform X1
KO
K13088
ELAV-like protein 1
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108270814 (elavl1b)
03041 Spliceosome [BR:
ipu03041
]
108270814 (elavl1b)
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
108270814 (elavl1b)
mRNA cycle factors
Stress granule specific factors
108270814 (elavl1b)
Spliceosome [BR:
ipu03041
]
Common components
Common spliceosomal components
General mRNP proteins
108270814 (elavl1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
108270814
NCBI-ProteinID:
XP_017333246
Ensembl:
ENSIPUG00000015781
UniProt:
A0A2D0RRW9
LinkDB
All DBs
Position
10:complement(4629456..4638787)
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AA seq
366 aa
AA seq
DB search
MAVRRGHIRYLKVCEVQSQGNDRDLQQLGKGTSMNDAYDLPNGFESHLGDEAKDAKTNLI
VNYLPQNMTQDELRSLFSSIGEVESAKLIRDKMGGHSLGYGFVNYINPSDAERAISTLNG
LRLQSKTIKVSYARPSSDTIKDANLYISGLPKTMTQKDVEDLFTQYGRIINSRVLVDQAS
GNDCLSRGVAFIRFDKRIEAEDAIKGLNGQKPPGASEPITVKFAANPNQAKNSQLLSQFY
NTQSRRFGGPVHHQAQRFRFSPMSVDHMSGVSSMNVAGSSTSGWCIFIYNLGQDSDEGLL
WQMFGPFGAVTNVKVIRDFNTNKCRGFGFVTMTNYEEAAMAIASLNGYRLGDKVLQVSFK
TSKSHK
NT seq
1101 nt
NT seq
+upstream
nt +downstream
nt
atggctgttagaaggggacacataagatacctgaaggtttgtgaggtgcagagccagggt
aatgaccgggatttgcagcagcttggcaagggtaccagcatgaacgacgcctatgacctt
cctaacggttttgagagccacttgggcgacgaggcgaaagacgctaaaacaaacctgata
gtcaattacctgccgcagaacatgactcaggatgagctgcgcagtctgttcagcagcatc
ggtgaggtggagtctgccaaacttattcgggacaaaatgggaggccacagtttagggtac
ggatttgttaactatattaaccctagtgatgcagaaagggcaatcagtactctcaatggg
ctgagactacagtctaaaactatcaaggtctcttatgccaggccaagctctgacacaata
aaagatgccaatctttacattagtggcttgcccaagaccatgacacagaaagatgtggaa
gacttgtttacccagtatggacgcatcatcaactcgagggtgctggttgatcaggcttca
ggtaacgactgtttgtcacgtggtgtcgccttcattcgctttgacaagagaattgaagca
gaagatgccatcaaaggtctgaatggtcagaagccccccggagcatctgagcccatcacg
gtcaagtttgcagcaaatcccaaccaggcaaagaactcccagctgctgtcacagttctat
aacacacagtctcggcgctttggaggccctgttcatcaccaggcacagaggttcaggttc
tcaccaatgagcgtagaccacatgagcggtgtttcaagcatgaacgtagccgggagctca
acctctggctggtgcattttcatttacaatctgggtcaagatagcgatgaaggcctgctg
tggcagatgttcggcccattcggcgcggtcaccaatgtcaaagtcatccgcgacttcaac
accaacaaatgcagaggctttggctttgtcacaatgaccaattacgaagaggcggccatg
gccatcgccagcctcaacggataccgtctgggggacaaggtcttgcaggtgtccttcaag
accagcaagtctcacaaataa
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