Ictalurus punctatus (channel catfish): 108270885
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Entry
108270885 CDS
T04658
Name
(RefSeq) RNA polymerase-associated protein CTR9 homolog
KO
K15176
RNA polymerase-associated protein CTR9
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ipu03021
]
108270885
Transcription machinery [BR:
ipu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
PAF1 complex
108270885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_14
TPR_19
TPR_16
TPR_8
TPR_CcmH_CycH
TPR_12
TPR_17
TPR_10
TPR_11
TPR_7
TPR_6
ARM_TT21_5th
TPR_Slam
ARM_TT21_4th
TPR_EMC2
ANAPC3
Motif
Other DBs
NCBI-GeneID:
108270885
NCBI-ProteinID:
XP_017333359
Ensembl:
ENSIPUG00000010291
UniProt:
W5U5U5
LinkDB
All DBs
Position
10:26887489..26900298
Genome browser
AA seq
1151 aa
AA seq
DB search
MSRGSIEIPLRDTDEVIELDFDQLPEGDEVISILKQEHTQLHIWIALALEYYKQGKTEDF
VKLLEAARIDGNLDYRDHEKDQMTCLDTLAAYYVQQARKEKNKDAKKDLINQSTLLYTMA
DKIIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSTNNIPALLGKACISFNKKDYR
GSLAYYKKALRTNPGCPAEVRLGMGHCFVKLNKLEKARLAFSRALELNPKCVGALVGLAV
LELNNKEADSIKNGVQLLSRAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTE
VEAMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASATFVLPFFGLGQMYVYRRDKENA
AQCFEKVLKAYPNNYETMKILGSLYATSDDQEKRDIAKGHLKKVTEQYPDDVEAWIELAQ
ILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNLGALHFRLGNLGEAKKYFLASLER
AKAEGEHDEHYYNAISVTTSYNLARLYEAMCEFHEAEKLYKNILREHPNYVDCYLRLGAM
ARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERILKQPSTQND
TYSMLALGNVWLQTLHQPTRDREKEKRHQDRALAIYKQVLRNDSKNLYAANGIGAVLAHK
GYFREARDVFAQVREATADISDVWLNLAHIYVEQKQYISAVQMYENCLKKFYKYQNTEVL
LYLARALFKCGKLQECKQMLLRARHVAPSDTVLMFNVALVLQRLATLVLKDEKSNLKAVL
SAVKELELAHRYFSYLSKAGDKMRFDLALAASEARQCSDLLSQAQYHVARARKQDEEEKE
LRAKQDQERELLRQQLQREQEEKRIKEAEEQKKLLEQRTQYVEKTKNLLNFTDEMKESAK
EKKKGGGGGGRRKKGAEYDDFVNDDSDEELPIRKKKRKAPRSGSEQEEDDEDGEKKQRRK
RRRPKGGDDGSDEDEGGSRPKKQRKPRERKRIEKSKPERLPASLKGKIKSKAIISSSDSS
SDEDGLKIAEDRHRDSGSGSEDGGHQKRIASDSESDEERRRSANSEEDDSGSERPVKKRR
PQPQSDSEQSDNESKRSRSDGSEDESRPGSPAPVSEQASENEGSPQRSDNESEPEGSNNE
ASNRGSDEDSD
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atgtctcggggatccattgaaatccccctgcgggacacagacgaggtgattgagctggac
tttgatcagcttcctgaaggagatgaagtgatcagtatcctgaagcaggagcacacacag
ctgcacatatggatcgcgcttgctctggagtactacaagcaggggaagacggaggacttc
gtgaagctgctggaggcagcgcgtatcgacggaaacctcgactacagagaccacgagaag
gaccagatgacgtgtctggacactctcgctgcgtattacgtccagcaggctcgcaaagag
aagaacaaggatgcaaaaaaggacctcatcaatcagtcgacgctcctgtacacgatggcg
gataagatcatcatgtacgaccagaaccacttgttgggacgagcctgtttttgcctgctg
gaaggggacaagatggatcaggcagacgcccagtttcacttcgtcctgaaccagtccact
aacaacatccccgcgctgctgggtaaggcttgtatctccttcaacaaaaaggactacaga
ggatctttggcttactacaaaaaagctctgcgcacaaaccccgggtgtccagctgaagtg
aggcttgggatgggtcactgctttgtgaagctgaacaagctggagaaagctcgtctagcc
ttcagccgcgccctcgagctcaacccgaagtgcgtgggagccctggtcggtctcgccgtc
ctcgagctcaacaacaaggaggctgactccatcaagaacggcgtgcagcttctctccaga
gcctacaccatcgacccgagcaaccccatggtgctcaaccacctggccaaccacttcttt
ttcaaaaaggattacagtaaagtccagcatttggcccttcatgcgttccacaacacggag
gtagaggccatgcaggcggagagctgctatcaactggctcgttccttccacgttcaggag
gactacgaccaggcttttcagtattactaccaggctacacagttcgcctcggccaccttc
gtgctgccgttcttcggcctgggacagatgtacgtgtatcgacgagacaaagaaaacgcc
gcccagtgcttcgagaaggtcttgaaggcgtacccgaacaactacgaaaccatgaaaatt
ctcggttcgctttacgcaacgtcagacgaccaggaaaaaagagacatcgctaaaggccat
ctaaagaaagttactgagcagtatcctgacgatgtagaagcctggatcgaacttgctcag
attctggagcagacagacatccagggtgctctgtcggcatacggcacagccacacgtatt
ctccaggagaaggtacaagctgacgtcccccctgagatccttaacaatctgggggctctg
cacttcagactggggaaccttggagaagcaaagaaatacttcctggcctctctggagaga
gccaaagcggagggtgagcacgatgagcattactacaacgccatttccgttaccacctcc
tacaacctggcgcggctctacgaggccatgtgcgagttccacgaggctgagaagctctac
aagaacatcctgagagaacatccaaactacgtcgactgttacttgcgtctcggagcaatg
gcccgtgacaagggcaacttctacgaagcctcagactggtttaaagaagctcttcagatc
aaccaggaccacccagacgcttggtccctgatcggaaatctccacttggccaagcaggag
tggggtcccggccagaagaagttcgagcgtatcctgaagcagccgtctactcagaacgac
acgtactccatgctggcgctgggtaacgtctggctgcagacgctacaccagcccacgagg
gatcgagaaaaggaaaagaggcaccaggacagagctttggccatttataaacaagttctg
aggaatgattcgaagaatctgtatgctgccaacggtatcggagctgttttggcccacaag
ggttacttccgtgaagcacgtgacgtgttcgcgcaggtccgggaagccacagcggatatc
agtgacgtctggctgaacctggcgcacatttacgtggagcagaagcagtacatcagtgct
gtgcagatgtatgagaactgcctaaagaaattctacaagtaccagaacaccgaggtgctg
ctgtacctggcccgagcgctgtttaagtgtggaaagctgcaggagtgcaaacagatgctg
ctgagggcccgtcacgtggctcccagcgacacggtgttgatgttcaacgtggccttggtg
ctgcagcggctcgccacactggtgctgaaggacgagaagagcaacctgaaggccgtcctg
agtgcggtgaaggagctggagctcgctcacaggtacttcagctacctcagtaaagccgga
gacaagatgagattcgacttggcgctggctgcgagcgaagcaaggcagtgctctgacctg
ctgagtcaggcgcaataccacgtggcccgcgcccgtaaacaggacgaggaggagaaggag
ctgcgagccaagcaggaccaggagcgagagctgctgaggcagcagctgcagcgcgagcag
gaggagaaacggatcaaggaggccgaggagcagaagaagctcctggagcagcgaacgcag
tacgtggagaagaccaagaacctcctcaacttcactgatgagatgaaggagtctgcgaaa
gagaagaagaaaggaggaggcggaggaggacggcgtaagaaaggagccgaatacgacgac
ttcgtcaacgacgactcggacgaggagctgcccatccggaagaagaagaggaaggcgcct
cgcagcgggagcgagcaagaggaagacgacgaagatggagagaagaagcagcgcaggaaa
aggaggagaccgaaaggtggtgacgacggaagtgacgaggacgagggcggctcgagaccg
aaaaaacagcgcaaacctcgagagcgcaagaggatcgagaaatcgaaacccgagcgtctg
ccggcgtctcttaaaggaaagatcaaatccaaggccatcatttcctcctcggattcctct
tcggatgaggacgggctgaaaatagccgaggaccggcatcgggacagcggctcgggatcg
gaggacggaggccaccagaaacgcatcgcgtccgacagcgaatccgacgaagagcggcgc
cgctcggccaactcggaagaggacgactccggcagcgaacggccggtgaagaagaggagg
ccgcagccccagtccgattccgagcaatcggacaacgagagcaagagaagccgctcggac
ggttccgaggacgaatcccggcccggttctccagcgccagtctcagagcaggcctccgaa
aacgaaggatcgcctcagcgctccgataacgaatccgagcccgagggatccaacaacgag
gcctcaaacagaggctctgacgaagacagtgactga
DBGET
integrated database retrieval system
