Ictalurus punctatus (channel catfish): 108270911
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Entry
108270911 CDS
T04658
Symbol
rc3h1a
Name
(RefSeq) roquin-1a isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ipu03000
]
108270911 (rc3h1a)
04121 Ubiquitin system [BR:
ipu04121
]
108270911 (rc3h1a)
Transcription factors [BR:
ipu03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
108270911 (rc3h1a)
Ubiquitin system [BR:
ipu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
108270911 (rc3h1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
zf-C3HC4
Prok-RING_4
zf-C3HC4_3
zf-CCCH
zf-CCCH_4
zf-CCCH_UNK
zf-C3HC4_2
zf_CCCH_4
Baculo_IE-1
FYVE
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
108270911
NCBI-ProteinID:
XP_017333414
Ensembl:
ENSIPUG00000024829
UniProt:
W5UGX6
LinkDB
All DBs
Position
10:16780543..16813669
Genome browser
AA seq
1102 aa
AA seq
DB search
MPVQAPQWTEFLSCPICTQTFEENVRKPISLGCGHTVCKMCLNKLHRKACPFDQTTISTD
IELLPVNTALLQLVCPQVPKSQPVTLVKGAEDIKHYDEARTCVEELALYLKPLSNTRGVG
LGTASQSLLSRPMQRKLVTLVHCQLVEDEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSPLSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ADIDPSPDAPAPTWEQLDKGLVAVKTVVHGLVDFIQNHSKKAGDPQQAPQHSKYKTYMCR
DMKQKGGCPRGASCTFAHSQEELEKFRKMNKRLPLRKPLSQSLTQLNDMDMGCNPGLLPD
EGLVLESLTHKSAMVPNGILSVPPGSELTHLVSRGSAAPYDTACKLAKLGTGSLSAPESP
PDSLDSIPKVMSSTSHPRVPREGLTAHTLSAVSRVPQMPQYPPHQPEAYYSESRVPPSAS
QYDSSQYPSGNSYAYQHLQPRYTRQPVDPGLAPYPDPYPVSYAPERQYPAPPSDPRYSYP
PHHDSRRHAPYGAHPPLPSYARDELGHRSPVPMEMTPPPQAPAAGASSSYLPESRERYGP
ESYNHSGHSRPYSGRSAYARPQPSLDYLHRRRKEIMAQLEERKVVSPPPFASSPNLAHSY
DPSYTQEARGQNHYMGENPPPCQNVRQPEYAASYSPWSCDTFVPYIGTKDMKSKDCSATG
YMEMQAIEKSRRDPALELQRRVAEVKDDDPIIPFGSLPTVSRFGAISRTSKSGYQPAGLV
PGPPAKHSANAVDYSYGNHGGWSEPSYTQHQTMPSQGHFSERLPPAAQDREQLKMELHQV
NQQITQQTRCMEREPVSAAGQAAPVEWSTASVSSEQLSLELHQVEREIGMRTREMAREAA
SMKYKLVAGSENGQSEHNLQREDHHLALNEGSNGSSSVVQDCGLGSSSMSSLNSKTSSLS
LSSELVGSSPDLTKNGVAHACS
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atgcccgtacaagcgccgcaatggaccgagtttctgtcctgtcccatctgcacgcagact
ttcgaggagaacgtgcgcaaacccatcagcctgggctgcggtcacactgtctgcaagatg
tgcctgaacaagctgcaccgcaaagcctgccctttcgaccagaccaccatcagcacagac
attgagctgctgcccgtcaacaccgcgctgctgcagctcgtctgccctcaggtacccaag
tctcagcccgtcaccttagtgaaaggagcagaggacatcaagcattatgatgaagcacgc
acgtgtgtggaggagctggctctctacctcaaacccctcagcaacacccgaggtgtaggg
ctgggtaccgcgagtcagagtctcctcagcagacccatgcagaggaagctggtgaccctg
gtgcactgccagctggtggaggacgagggtcgtatccgggccatgcgtgcagcccgatct
ctgggtgaacgcacagtcaccgagctcatcctgcaacatcaaaacccgcagcagctctcg
tccaacctgtgggccgctgtacgagcacgaggctgccagttccttggccctgccatgcag
gaggaggctctaaagttggtgctgctggcattggaggacggttcgcctctgtcccgcaag
gttctggttctgtttgtggtccagaggctggagccacgcttccctcaagcctctaaaacc
agtatagggcatgtcgtacagctgctgtacagagcctcttgttttaaggtgaccaagcga
gacgaggactcatccctgatgcagctaaaggaagagtttaggacgtatgaggctctgcgg
agagagcatgactcccagattgtccagatcgccatggagggaggcctgcgtattgcccct
gaccagtggtcctccctactctatggggatcagtcccacaagtcccacatgcagtcaatc
attgataagttgcagacgccagcgtcttttgctcagagtgtacaggagctcactattgcc
ctgcagagaacaggagacccggccaacctcaatcgccttagaccgcatttagagctgctg
gctgacatcgacccgagcccagatgcccctgcccctacatgggagcaactggacaaaggg
ctggtggctgtaaaaacagtagtgcatggtcttgtggacttcatccagaatcatagcaag
aaggcaggagacccacagcaggctcctcagcacagcaagtacaagacatacatgtgtaga
gatatgaagcagaagggagggtgtcccagaggcgcaagctgcacctttgcccattcccag
gaggaactggaaaagttccgtaagatgaataagcgtctgcctttgcgaaagccactcagc
cagtcactgacccagcttaacgacatggacatgggttgcaatccgggccttctgcctgat
gagggattggttctggagagtctgacccacaaatctgccatggtccctaatggcattcta
tcagtgccacctggatcagagctcacacatctggtctcccgtggatcggcagcaccctac
gacacggcttgcaagctggcaaaactaggcacaggcagccttagtgctcctgaatcacct
ccagattccctggactccattcctaaagtgatgtcttcaacatctcatcctagagtcccg
agagagggtctgactgcacacacattgtctgctgtctccagagttccccaaatgccacaa
taccctccacatcagcctgaggcgtattactcagaatccagagtaccaccgtctgcttca
caatatgattcctctcagtatccctctggcaactcctacgcttatcagcacttgcagcct
cgctacactcgccaaccagttgaccccggcttggcgccctacccagacccctatcctgtg
tcctacgccccggaacggcagtatcccgctcctccatctgaccctcgctatagctatcca
ccgcatcacgacagccgccgacatgcaccttatggagcccaccctcctctcccgtcatat
gctcgagatgagctgggccacaggagtcccgtccctatggagatgaccccaccaccacag
gcgccggcagcaggagcctcgtcctcctacctcccagaatcacgggaaagatacggccct
gagagctacaaccactccggccacagcagaccttacagcggccggagcgcctatgcccgg
ccacagcccagcctggactaccttcaccgtcggaggaaggaaatcatggcccagcttgag
gagcggaaagtagtttctcctcctccctttgcctcctctccaaacctggctcattcttat
gaccccagttatacacaagaggccagggggcaaaatcattatatgggagaaaaccctccg
ccgtgccagaatgtcagacaaccggaatacgcggcttcgtactcgccgtggtcatgtgac
acttttgtcccgtacatcggcaccaaggatatgaagtccaaagactgctcggccacaggc
tacatggagatgcaggccatagaaaaaagccggagagatccggctctggagttgcagcgt
cgagtggcagaggtcaaggatgatgacccgattatcccttttggctcgctgcccaccgtc
tctcgctttggagccatatctcgcacgtccaaatcgggatatcagcctgctggccttgtt
ccaggccccccagccaaacactctgcaaatgcagttgattacagctatgggaatcacgga
ggatggagtgaaccctcttacacccaacaccaaactatgccatctcagggacactttagt
gaacgtctgccccctgctgcccaggacagggaacagctgaagatggagctccatcaagtc
aaccaacagattacccaacagactcgctgtatggagagggaaccagtttcagcagctggc
caagcagctccagtggagtggtcaacagctagtgtttccagtgagcagctgagtctagag
ttgcaccaggtggagagagagatcggcatgaggacacgcgagatggccagggaggcagct
agcatgaagtacaagctggtagctggaagtgagaacggacagagtgagcacaatttacag
cgggaagatcaccacctagccctcaatgagggatcaaacggttccagttctgtggtgcag
gattgtggtttgggcagctccagcatgtcctccctgaacagcaagacatcctcactcagc
ctgtcgtctgaactggtgggcagcagcccggatctgaccaagaacggggtggctcatgcg
tgctcatag
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integrated database retrieval system
