Ictalurus punctatus (channel catfish): 108270927
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Entry
108270927 CDS
T04658
Symbol
sptbn1
Name
(RefSeq) spectrin beta chain, non-erythrocytic 1 isoform X1
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
108270927 (sptbn1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
ipu04812
]
108270927 (sptbn1)
Cytoskeleton proteins [BR:
ipu04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
108270927 (sptbn1)
Intermediate filaments
Intermediate filament-binding proteins
108270927 (sptbn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
CAMSAP_CH
PH_11
SOS1_NGEF_PH
PMC2NT
Motif
Other DBs
NCBI-GeneID:
108270927
NCBI-ProteinID:
XP_017333437
Ensembl:
ENSIPUG00000012705
UniProt:
A0A2D0RSF8
LinkDB
All DBs
Position
10:25809838..25893619
Genome browser
AA seq
2349 aa
AA seq
DB search
MTTVAAEYDHMDIQQQYQDTVNNRWDEEWDNENSSARLFERSRIKALADEREAVQKKTFT
KWVNSHLARVSCRITDLYMDLRDGRMLIKLLEVLSGEKLPKPTKGRMRIHCLENVDKALQ
FLKEQRVHLENMGSHDIVDGNHRLTLGLIWTIILRFQIQDISVVTEDNKEKRSAKDALLL
WCQMKTAGYSNVNIHNFTTSWRDGMAFNALIHKHRPDLIDFDKLKKSNAHYNLQNAFNLA
EQHLGLTKLLDPEDISVDHPDEKSVITYVVTYYHYFSKMKALKVEGKRIGKVLDNAIETE
KMIEKYESLASDLLEWIEQTIIILNNRKFANSLVGVQQQLQAFNTYRTVEKPPKFTEKGN
LEVLLFTIQSKMRANNQKVYMPREGKLISDINKAWERLEKAEHERELALRNELIRQEKLE
QLARRFDRKAAMRETWLSENQRLVSQDNFGFDLQAVEAATKKHEAIETDIAAYEERVQAV
VAVAKELEAENYHDIKRIAARKDNVLRLWDYLLELLKARRQRLEMNLGVQRVFQEMLYIM
DWMDEMKMLLLSQDYGKHLLGVEDLLQKHALVEADIAIQADRVRAVNANAQKFAVDDEGY
KPCDPQVIRDRVAHLEFCYQELTQLAAERRARLEESRRLWKFFWEMAEEEGWIREKEQIL
SSDDVGKDLTGAVRLLSKHRALEDEMSGRAGHLQHTVREGQAMADAGHFGEAKIRERVAD
VQAQWTALERLAAVRKARLEQACSLHQFQADADDVDAWMLDALRIVSSDDVGHDEFSTQA
LVKKHKDAVADVASYRPVIDSLHEQAQALPDELAQSTDISERLAGIEERYKELAEITRLR
KQALQDALALYKMFSEADACEVWIDEKEQWLNSMEIPEKLEDLEVIQHRFESLEPEMNNQ
ASRVAVVNQIARQLIHSGHPSEKDIKAQQDKLNTRWSQFRDLVDQKKESLHSALGVQNYH
LDCNETKSWIREKTKVIESTQDLGNDLTGVMALQRKLTGMERDLAAIEAKLGDLRGEAER
LAAEHPEQAKAITGRLADIGGVWEELKDTLQNREASLGEASKLQQFLRQLDDFQSWLSRT
QTAIASEDMPNTLAEAEKLLAQHEGIKHEIDNYEEDYQKMRDMGEMVTQGQTDAQHMFLR
QRLQALDTGWNELHKMWENRQNLLSQSHAYQLFLRDTKQAETFLNNQEYVLAHTEMPTTL
EGAEAAIKKQEDFMTTMDANEEKINGVVEAGRRLASDGNINAEKIQERATSIDDRHKKNR
EAAVELLMRLKDNRDLQKFLQDCQELSLWINEKMLTAQDMSYDEARNLHSKWLKHQAFMA
ELQSNKEWLEKIEKEGMQLVSEKPETEAVVKEKLTVLQTQWQELESTTQTKAQCLFDANK
AELFTQSCADLDKWLAGLEGQIQSDDYGKDLTSVNILLKKQQMLEKQVEVRKREVEELQS
QAHVLQQEGKDTDEVDGRREVVEKKLQELLDPLQKRKNFLMASREIHQFNRDVEDEILWV
EERMPLATSTDHGHNLQTVQMLIKKNQTLQKEIQGHQPRCDDIFERSESIVTEDTPSVEA
IRARLAELQDLWNLLIQETAKRHERLEEAHQAQQYYFDAAEAEAWMSEQELYMMSEEKAK
DEQSSVAMLKKHQILEQAMEDYADTVHQLSKTSRGLVADNHPESERIGMRQSQVDKLYAG
LKDLSEERRGKLDERFRLFQLNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFRE
FARDTGNIGQERVDGVNRMADELINAGHADAATVAEWKDGLNEAWADLLELIDTRTQILA
ASYELHKFYHDVKEILSRILDKHKKLPEELGRDQNTVEALQRMHTTFEHDIQALGTQVRQ
LQDDATRLQSAYAGDKADDIQRRESEVLDAWRNLLEACEGRRARLLDTGDKFRFFNMVRD
LMLWMEDVIRLIEAQENPRDVSSVELLMNNHQGIKAEIDARNDSFTACIELGKSLLARKH
YASDEIKEKLLQLTDKRKEMIDKWEDRWEWLRLILEVHQFSRDAGVAEAWLLGQEPYLSS
KEVGQSVDEVEKLIKRHEAFEKSAATWEERFSALERLTTLELLEVRRRQEEEERRRKPPT
PEPEQEIEAQQREGEQIAQNGLPSDQESPRDGVDGEIVNGVPERSSKEPSPIPSPSSGRR
GKGSQSSTLPAKSQESPSAQLEGFLHRKHEFEGHNKKASNRSWHNVYCVINNQEMGFYKD
NKNAGQGIPYHNEIPVSLKDAVCEVAIDYKKKKHVFKLRVTNGNEYLFQAKDDEEMNTWM
QAIQNAVSGSSPSDKSDVTPSNQSTPASSRAHTLPATVTLTTESSPGKREKDKEKDKEKR
FSLFSKKKQ
NT seq
7050 nt
NT seq
+upstream
nt +downstream
nt
atgacgacagtagccgccgaatatgaccacatggacatccagcagcagtaccaggatact
gtcaacaaccgctgggatgaggagtgggacaacgagaacagctcggcccgcctgttcgag
cgctcacgcatcaaggccttagcagatgagcgtgaggcggtgcagaagaagaccttcaca
aaatgggtcaactcacacctggcacgggtctcctgccgcatcacagacctgtacatggac
ctacgggatggacgcatgctcatcaagctcctggaggtgctctccggagagaagctgccc
aaacccacgaagggccgaatgagaatccactgtctggagaatgtggataaagccctgcag
ttcctaaaggagcaacgtgtccacctggagaacatgggctcccatgacatcgtcgatggc
aaccatcgcctcacgctcggcctcatctggaccatcatcctccgcttccagatccaagac
atcagcgttgtaacggaagacaataaagagaagcgttcggctaaagacgctctgctcctg
tggtgtcagatgaagacggcaggctattcaaatgtcaacatccacaacttcaccaccagc
tggcgcgacggaatggcgttcaacgccctcatccacaaacacaggccggatcttattgat
tttgacaagctgaagaagtccaacgctcactacaaccttcagaatgccttcaacttggcc
gagcagcacctgggcctcactaaactgctcgaccctgaggatatcagcgtagaccatcct
gatgagaagtcagtcatcacctacgtcgtcacatactaccactacttctccaaaatgaag
gctctgaaggtggagggcaaacgtattggcaaagttctggataacgccatcgaaacagag
aagatgatcgagaaatacgagtctcttgcgtcggaccttctggagtggatcgagcagacc
atcatcatcctgaacaaccgcaagtttgctaattctctagtaggagtccagcagcagctc
caggccttcaacacgtaccgtactgtagagaagcctcccaagttcacagagaaaggtaac
ctggaagtccttctgttcacgatccagagcaaaatgagagccaacaaccagaaagtctac
atgccgagggagggcaagctcatctccgacatcaacaaggcctgggagcgtctggagaag
gcggagcatgagcgtgagctggccctgaggaatgagctgattcgtcaggagaagctggag
cagctggcacgccgcttcgaccgcaaggcggccatgagagaaacctggctcagcgagaac
caacggctggtgtcacaggacaacttcggcttcgacctccaggcagtggaggcggccacc
aagaagcacgaagccatcgagacagacatcgcagcctacgaggagcgtgtgcaagccgtg
gtggccgtggctaaagagctggaagcggagaactaccacgacatcaagcgtattgcggca
cgtaaggataacgtgctgcggctctgggactacctactggagctgctgaaggcaagaagg
cagaggctggagatgaacctgggtgtgcagcgtgtcttccaggaaatgctctacatcatg
gactggatggatgagatgaagatgctactgctgtctcaggactacgggaagcacttgctg
ggagtggaagatctgctccagaaacacgctctggtggaggctgatatcgccatccaggcc
gaccgagtgcgggccgtcaacgccaacgcacagaaattcgctgttgatgatgaaggttac
aagccgtgtgatccgcaggtgatccgtgatcgcgtggctcacctggagttctgctaccag
gagttgacgcagctggcggctgagcgacgcgcacgtctggaggagtctcggcgactctgg
aagttcttctgggaaatggctgaggaggagggttggatccgtgagaaggagcagatcctg
tcatcagacgacgtcggcaaggacctgacgggtgccgtgcgtttgctgagtaagcaccgg
gcgcttgaggacgagatgagtggccgagccgggcacctgcagcacacggtgcgtgagggt
caggcgatggctgacgccggacactttggcgaggccaagatccgcgagcgtgtggccgat
gtgcaggctcagtggacggcgctggagcgactcgctgcagtccggaaggcacgtctagag
caggcgtgcagcttgcaccagttccaagctgatgctgacgatgtggacgcctggatgctg
gacgcgctgcgcatcgtctcgagtgacgacgtcggccacgatgagttctccacgcaggcg
ctggttaagaagcacaaggacgctgtagccgacgtggccagctacaggcccgtgatcgat
tcactccacgagcaggctcaggcactgcccgatgagctggcccagtcaaccgacatcagc
gaacgcctggcgggaatcgaggagcgctataaggagctggcagagatcacccggctgagg
aagcaggctctgcaggatgcactggctctctataagatgttcagtgaggctgatgcctgc
gaggtctggatcgacgagaaggagcagtggctcaacagcatggagattccagagaagctg
gaggacctggaagttattcagcacaggttcgagagtctggagcctgagatgaataaccag
gcgtcccgtgtcgctgtggtcaatcagatcgcccggcagctgatacacagtggacacccc
agcgagaaggacatcaaggctcagcaggacaaactgaacaccaggtggagccagttcaga
gacttggtggaccagaagaaggagtcgctgcactcagcgttgggtgtccagaactatcac
ctggactgcaacgagaccaagtcgtggatccgtgagaagaccaaagtgatcgagtccact
caggacctgggtaatgacctgacaggagtcatggcactgcagcgcaagctgacggggatg
gagcgggacctggccgccatcgaggccaaactgggtgacctgcgtggagaggcagagcgt
ctggcagctgagcatcctgaacaagccaaggctatcacgggcaggctggcggacatcggc
ggtgtctgggaagagctgaaggacactctgcaaaaccgcgaggcctctctgggtgaagca
agcaagctgcaacagttcctccgccagctggatgacttccagtcatggctgtctcgcacg
caaacggccatcgcctctgaggacatgcccaacaccctagccgaggctgagaagcttctc
gcccaacacgaaggcatcaagcacgagatcgacaattacgaagaggactaccagaagatg
cgggacatgggcgagatggtgacccaaggccagacggacgcccagcacatgttcctgagg
cagcggctgcaggcgctggacaccggttggaacgagctgcataagatgtgggagaaccgt
cagaacctcctgtcccagtctcacgcctaccaactgttcctcagggacactaagcaggcc
gagaccttcctcaacaatcaggagtatgtgttggcccacactgagatgcccaccactcta
gaaggagcagaagctgctattaagaagcaagaggacttcatgaccactatggacgccaat
gaggagaagatcaacggcgtggtggaggccggacgcagactggccagtgacggaaacatc
aacgctgagaagattcaggagagagcaacttccattgatgacagacataagaagaaccgt
gaggcggctgtggagctcctgatgagacttaaagataaccgagacctacagaagttcctg
caggactgccaggagctgtctctgtggataaacgagaagatgctgacggctcaggacatg
tcgtacgacgaggccagaaacctgcacagcaagtggctcaagcaccaagccttcatggcc
gagctccagtccaacaaagagtggctggaaaagattgagaaggaagggatgcagctggtc
tcagagaagcctgagacagaggccgtggtcaaggagaagctgacggtactgcagacgcag
tggcaggagctggagtccaccacgcagaccaaagcgcagtgcctgttcgacgccaacaag
gccgagctgttcacgcagagctgcgccgatctcgacaaatggctggcgggtctggagggt
cagatccaatcagacgactacggcaaagatctaaccagtgtcaacatcctgttgaagaaa
caacagatgctggagaagcaggtggaggtgcgtaagagggaggtggaggaacttcagtcg
caggctcacgtgctgcagcaggagggcaaggacacggacgaggtggacgggcggcgcgag
gtggtggagaagaagctccaagagctgctcgatcctcttcagaagaggaagaactttctc
atggcttccagggagattcaccagttcaaccgtgacgtcgaggacgaaattctctgggtt
gaggagaggatgcctctggctacttcaacagaccatgggcacaacttacagaccgttcag
atgctcatcaagaagaaccagaccctgcagaaggagatccagggacaccagccacgctgc
gatgacatcttcgagcgcagcgagagcatcgtgacggaggacaccccgagcgtggaggct
atcagagcacgtctcgctgagctacaggacctctggaacctcctcatccaggagacagcg
aagcggcacgagcggctggaggaggcccatcaggcgcagcagtactacttcgacgcggcc
gaggcggaggcctggatgagcgaacaggagctttacatgatgtcagaggagaaagctaag
gatgaacagagctccgtagccatgctgaagaaacaccagatcctagagcaggcgatggag
gactacgccgacaccgttcatcagctctccaagaccagccgtggtctggtggctgacaat
caccccgaaagtgagagaataggcatgcggcagtcgcaggtggataagctgtacgcagga
ctgaaggacctgtcggaggagaggagaggaaaactggacgagaggttccgtcttttccag
ctgaaccgcgaggtggacgatctggagcagtggatcgctgagagagaagtggtggcagga
tctcacgagctgggccaggactacgagcatgtcactatgctgcaggaacgtttccgtgag
ttcgcccgcgacaccgggaacatcggtcaggaacgtgtggacggtgtaaaccggatggcc
gacgagctcatcaacgccggccacgctgacgctgcgaccgtcgccgagtggaaggacggg
cttaacgaggcctgggcggatcttctggagctgatcgacactcgcacgcagatcctggcg
gcttcctacgagctgcataagttctaccacgacgtcaaggagatcctgagccgcatcctg
gacaagcacaagaagcttccggaagagctcggacgagaccagaacacggtggaggcgctc
cagaggatgcacaccacctttgaacacgacattcaagcactggggacgcaggtcaggcag
ctgcaggacgacgcgacacgtttgcagtcggcgtatgccggcgataaggctgacgatatc
caacggagggagagcgaagtcctggacgcgtggcggaaccttctggaagcctgtgaagga
cggagggcgcgtctcctcgacaccggagacaagttccgcttcttcaatatggtgcgtgac
ctcatgctctggatggaggacgtcatccgtctcatcgaggctcaggagaatcccagggac
gtctcctctgtggagctacttatgaacaaccaccagggcatcaaggccgagatcgatgcg
cgcaacgacagtttcaccgcctgcatcgagctgggcaagtctctactggcacgcaaacac
tacgcatcagatgagattaaagaaaagttgctacagttgacggacaagaggaaagaaatg
attgacaaatgggaggacagatgggagtggctaagactgattttggaagtgcaccagttt
tcaagggacgcgggggtagccgaggcgtggttgctgggtcaggagccgtacctgtccagt
aaggaggtgggtcagagtgtggacgaggtggagaagttgatcaagaggcacgaggcattc
gagaagtcagctgctacctgggaggaacgcttctctgcgctggagaggctgactacgctg
gagttactggaagtgagaagaaggcaagaagaagaggagagaagaagaaaacccccgacg
ccagagccggagcaggagatcgaggcacagcagagagaaggagagcagattgctcagaac
ggactgccgtcagaccaggaatccccacgggacggagtggacggagaaatcgtgaacggc
gtgcccgagcggagctctaaggagccgagtcccatcccatccccgagctcaggcagacgc
ggtaagggcagccaatcgtccaccctgccggccaaaagtcaagagtctccctccgcccaa
ttggagggcttcctacaccgcaagcatgagtttgagggccacaacaagaaggcatccaac
aggtcctggcataacgtgtactgcgttatcaacaaccaagagatgggcttctacaaagac
aacaagaacgccgggcagggcatcccgtaccacaacgagatccccgtcagcctgaaagac
gccgtctgcgaggtcgccatcgactacaagaagaagaagcacgtcttcaaactgagagtg
acaaacggaaacgagtatctcttccaagccaaagatgacgaggagatgaacacatggatg
caggctattcagaacgcagtcagcggctcctccccttcggacaagtctgacgttacgcct
agcaaccagagcactcctgcctccagccgtgcccacacactcccggcaaccgtcaccttg
acgaccgagtcgagcccgggcaagcgggagaaagacaaggagaaagacaaagagaagcgt
ttcagtctcttcagcaagaagaagcagtag
DBGET
integrated database retrieval system
