Ictalurus punctatus (channel catfish): 108270951
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Entry
108270951 CDS
T04658
Symbol
si:dkey-110c1.10
Name
(RefSeq) unconventional myosin-Vb
KO
K10357
myosin V
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04814
Motor proteins
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09140 Cellular Processes
09142 Cell motility
04814 Motor proteins
108270951 (si:dkey-110c1.10)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108270951 (si:dkey-110c1.10)
04131 Membrane trafficking [BR:
ipu04131
]
108270951 (si:dkey-110c1.10)
03029 Mitochondrial biogenesis [BR:
ipu03029
]
108270951 (si:dkey-110c1.10)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
ipu04812
]
108270951 (si:dkey-110c1.10)
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Cargo complex
108270951 (si:dkey-110c1.10)
mRNA cycle factors
P-body specific factors
108270951 (si:dkey-110c1.10)
Membrane trafficking [BR:
ipu04131
]
Others
Actin-binding proteins
Myosins
108270951 (si:dkey-110c1.10)
Mitochondrial biogenesis [BR:
ipu03029
]
Mitochondrial quality control factors
Mitochondrial dynamics
Retention of mitochondria
108270951 (si:dkey-110c1.10)
Cytoskeleton proteins [BR:
ipu04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Myosins
108270951 (si:dkey-110c1.10)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Myosin_head
DIL
IQ
Myosin_N
nSTAND3
DUF5917
AAA_22
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
108270951
NCBI-ProteinID:
XP_053539176
UniProt:
A0A9F7TNF7
LinkDB
All DBs
Position
10:12373654..12397831
Genome browser
AA seq
1657 aa
AA seq
DB search
MTSPELYTKGACVWVPDSEEVWVCAQLEQDYQPGDQQLTLKLSDGTQVQYPIAPSTGLPP
LGNPDILEGENDLTALTFLHEPAVLHNLRVRFLHYNSIYTYCGIVLVALNPYEQLPIYGE
EVMDAYSGQDMADMDPHIFSIAEEAYRTMIREERNQSIIISGESGSGKTVSAKFTMRYFA
VVGGAAQQTSVEEKVLASNPIMEAIGNAKTTCNDNSSRFGKYIEIGFGSKGDIIGANMRT
YLLEKSRVVFQAPEERNYHIFYQLCASRDLPELRPLKLDTAEHFRYTNQGQETNIPGTDD
AMELDHTRNALTILGVPPDQQMEFFRILAAVLHLGNVGIQASGRGGERSYINADDKSLVV
FSKLMGVEGPQMAHWLCHQRLAVGGELLVKPMSAQKANEARDALAKHVYGQLFTWTVQRL
NSALRAQREQPKMCIGVLDIYGFETFDRNSFEQFCINYANEKLQQQFNRHVFQLEQEEYE
REELPWNRIEFSDNQPCITLIEGSLGLLDLLDEECRIPKGSDENWARKLYDQHLNRSPNF
RKPRMSNVAFIVLHFADMVQYECEGFLDKNRDTIFEEPINIMRASQSELVAELFQQGSAG
GPLSASSVPASVRPGKRAHREHKLTVGFQFRQSLQLLMDTLNSTTPHYVRCIKPNDLKQP
FLFDPKRAVQQLRACGVLETIRISAAGYPSRWTYEDFFSRYRVLLHSVSVQEDLRASCRK
EIPDLIHDPEQYCFGKTKIFFRGGQVALLEKLRAERLRAAGVKIQSWVRGWIQRRCYLQL
RWATLILQRYTRGALARRLAWTLRYTRAALVIQKTYRMVIVRQLYLTARKAAITIQAFAR
GMQARHAYRMLLMERAAVCLQAWVRCWLARRWFKRIRAAVVLMQCCVRRRAARKEFQKLR
AQARSVERYRELNKGMEVKLMQLQLRADQQARESASLRESLHAERESHNTEVDQLRSTLL
KLQQQLQEQSQAVPSFTAKQEEEKRRAEERAAQEIHQLTQEMEALKVERDSLEKERDDLV
TRLWEQEKIQEESRQQSVLQAGAAVQAELEEERRRYQGLLREFTRLEQRYDNLREMSMLP
TSERWPGHRRTDSIQSVSLDPVSPISPSFGSIPDFSSSEESRRISVTSPFDRRPGSTEAP
LNALMEDLGVSKDTVGKMQGEDLYHAYDAVRVANKFLERQLLTKRAEWEQEKIVLQQLHE
AHTRDAPVSTELKELMEQLEVREHECYRLRRELKELKHTVTLRKMISYAGPAMSASQNTV
NTPQHLGLTLTGLLECRKRDENRLIKNLITDVRVDVALSLAPGLAAQILFLCVRQADCSR
DEARAQGLCITVLTAIKAALKKHNGDLDMTALWLKNAYLLKDLLTQHSPTQETRRGEDVL
PLQVELKEQVRMLGDVCIQAYQQLLSIAESHLQPIIVPAMLESETIPGLSGAVVKLVTSR
KRASSDPRPAGSPDGTSMATILRELGALHTALVRQELPAALLEQAFRQLTHLLAACTLNS
LILRKDMCCWNRGMLIRYNVSLLEEWLRSHGLQTGGAAATLEPLIQATQLLQMSKKSEAD
GQAIVDTCNALSSQQVLKILSQYTPQGDAEERVTLRFIRIVQGLLKGRVDGNITVPGLLL
DIRRVFPVTFPHTSPSPISAEQLHIPEALKMNFLRRV
NT seq
4974 nt
NT seq
+upstream
nt +downstream
nt
atgacatcccctgaactctacactaagggagcgtgtgtgtgggtgccagattctgaagag
gtgtgggtgtgtgctcagcttgagcaagactaccaacctggggatcagcaactcacatta
aagctcagcgatggcacacaggtgcagtaccctatcgcaccctctactggtttgccccct
ctgggaaacccggatatactggagggtgaaaacgacctgacagcactcaccttcctacat
gagcctgccgtgctgcacaacctccgcgtgcgcttcctccactacaacagcatctacacc
tactgtggaatcgtgttagtggccctgaacccatatgaacagctgcccatttatggagaa
gaggtgatggatgcatacagtgggcaggacatggctgatatggatcctcatatcttctcc
atagcagaggaagcctatcgtaccatgatcagagaggagagaaaccagtccattatcatt
agtggtgagtcaggatctgggaaaaccgtgtctgcaaagttcaccatgcgctactttgct
gtggttggaggagcagctcagcagaccagtgtagaggagaaagtcttagcctccaatccc
atcatggaggctattgggaatgctaaaactacttgtaatgacaacagcagcaggtttggg
aagtatattgagattggctttggatctaaaggagatataattggagcaaacatgaggact
tacctcttggagaaatctagagttgtttttcaggccccagaggaaaggaactatcacatt
ttctaccaactttgtgcctccagagacctaccagaactgaggccactcaaacttgacact
gcagagcattttagatacacaaaccaaggacaggagacaaacattccaggtacagatgat
gccatggagctggatcatactcgaaatgctttgactattctgggagttccacctgaccag
cagatggagttctttcggattttggcagcggtcctccatcttggaaatgttggcatccaa
gccagtggcagaggaggcgaacgtagctacatcaatgcagatgacaaatctctggtggta
ttctccaaactaatgggggttgagggccctcagatggcccactggttatgtcatcagcgt
ctagctgtaggtggggagctactggtaaagcctatgtcagcccagaaggctaatgaggca
cgggatgctctggctaaacatgtgtatgggcagctctttacctggactgtacagaggctg
aactcagctctaagggcacaaagagagcaacctaagatgtgtataggagtgctggacatc
tatggatttgagacctttgacagaaacagctttgaacaattctgcattaattatgccaat
gagaaacttcagcaacagttcaacaggcacgtgttccagctggagcaggaggaatatgag
cgagaggagctaccctggaaccgtattgagttcagtgataaccagccctgcataaccctc
atagagggctctctgggtctcctggacctgctggatgaggaatgcagaattcctaaaggc
tcagatgaaaactgggcacgaaaactgtacgaccagcacctgaaccgaagccccaacttt
cgcaagccacgcatgtctaatgttgcctttattgtgctccatttcgctgatatggtccag
tatgaatgtgaaggatttttagataaaaatcgtgacacaatatttgaagagcccattaat
ataatgcgcgccagtcagtcagagctagttgctgagttgttccagcaggggtcagctggg
ggccctctctctgcctcatctgtgcctgcgagtgtgcgtccaggaaaaagagctcaccgc
gagcacaaactgacggtgggcttccagttccgacagtctctgcagctcctgatggacacc
ctgaacagcaccaccccacattatgtacgctgcatcaaacccaacgacctcaaacagcct
ttcctgtttgatcctaaaagagcagtacaacagctgcgagcctgtggtgttctggagaca
atccgcatcagtgctgcaggctacccatccaggtggacatatgaagacttcttcagtcgt
tatagagttctccttcatagtgtatctgttcaggaagatttgcgggcatcctgccgaaaa
gaaattcctgaccttatccatgaccctgagcagtattgttttggcaagacaaaaatattc
tttcgggggggtcaggtagctttgctggagaagctgagggctgagaggctacgggcagca
ggggtaaagatccagagctgggtgagaggctggatccagcgccgatgctatctgcagcta
cgctgggccactttgattctgcagagatacacccggggagctctggcccgcagattggct
tggacactgaggtacacacgggctgctctggtcattcagaagacttaccgtatggtaata
gtaaggcagctctaccttactgctagaaaggcagcaataactatccaggcctttgccagg
ggcatgcaggctcgccatgcatacagaatgctgctgatggagagggcagcagtttgtcta
caggcatgggtgcgctgctggcttgctcgacgttggttcaaacgcattagggcagcggtg
gtgctgatgcagtgctgtgtgcgcaggagagctgcacgtaaggagttccagaagttgcga
gcacaagctcgctctgtagagaggtacagagagctcaacaagggcatggaggtcaaactc
atgcagcttcagctgcgtgctgaccagcaggccagagaaagcgcatctctacgtgaatct
ctccatgctgaacgcgagtcacacaatacagaggtggatcagctgcgctcaactctgctc
aaactgcagcagcagctccaggagcagagccaagctgttccctctttcacagccaaacaa
gaggaggaaaagaggagagctgaggagagagcagctcaggagattcaccagctcacacag
gagatggaagctttgaaagtggagagggactctttggaaaaggaaagagatgatctggtc
actcgtttatgggagcaggagaaaattcaagaagaaagcaggcagcagtctgtgttgcag
gcaggagcagcagtacaggccgagctggaggaggagaggaggagatatcagggcttgctg
agggagtttacccgcttagagcagagatacgacaacctgagggagatgagcatgctccct
acttctgagcgttggcctggacacagaagaactgattccattcagagtgtttctttggac
cctgtttctcccatctctccatcctttggcagcatccctgacttttcctcttctgaggag
agcaggaggatcagcgtcacctcaccttttgacaggaggcccggcagcacagaggcacct
ttgaatgcattaatggaggatctgggtgtgtcaaaggacacagtaggaaagatgcaagga
gaggacctttaccatgcttacgatgctgtcagggtggccaacaagtttctggagaggcag
ctgctgactaaaagagctgagtgggagcaggagaaaattgttcttcagcagctccatgaa
gcccacactagagatgctccagttagcacagagctgaaggagctaatggagcagctggag
gttcgggaacacgaatgctacaggctgaggagggaactaaaggagctgaaacacacagtg
acactcagaaaaatgatttcttatgcaggtccggccatgtctgcatctcagaacacagtg
aatacaccacaacatttgggcctgacactgactggactactagagtgtaggaagagagat
gagaacagactgataaaaaacctcattacagatgtacgagtggatgtggctctttctctg
gcacctggactggcagcacagatcctgttcctgtgtgtgcgtcaggcggactgcagcagg
gatgaggctcgggcccaaggcctctgtatcactgtgctgactgccatcaaagcagcctta
aaaaagcataatggtgatttggacatgacggcgctgtggctgaagaacgcttacctgctc
aaagacctgctcacccagcattcacccacacaggagacaaggagaggtgaggatgtgctc
ccgctgcaggtggagctgaaggagcaggtacgaatgctcggtgatgtgtgtattcaggct
taccagcaactcctctccatcgctgagagccacctgcagcccatcattgttccagccatg
ttggagagcgagaccatcccaggcctgtctggagctgtggtgaagctggtcacctctcgt
aagcgtgcgagttcagaccctcggcctgcaggctctccggatgggaccagcatggcaact
atactgagggagctaggagctctgcacactgcactggtgcggcaggagcttcccgccgcc
ctactcgaacaggccttccgccagctcacacacctgctcgctgcctgcacactcaacagc
ctcatacttcgcaaagacatgtgctgctggaaccgtggcatgctgatccggtataatgtg
agtttgctggaggagtggctgaggagtcatggcctgcagacagggggcgctgcagccaca
ctggagccactgatccaggcaacacagctcctccaaatgagcaagaagtcagaggctgac
ggacaggccatagttgacacctgcaatgccctgtccagccagcaggttttgaagatttta
tcacagtacactccacagggtgatgctgaagaaagagtcacgctccgtttcattcgcatt
gttcaggggctgctgaaggggcgtgtggatggaaacattactgttcctggactgttgctg
gacattcggagggttttccccgtcaccttcccacacacatcgccttcaccaatcagcgcc
gagcagctgcacatcccggaagcactcaaaatgaacttcctgcgcagagtctga
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