Ictalurus punctatus (channel catfish): 108270975
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Entry
108270975 CDS
T04658
Name
(RefSeq) transcription factor SOX-6 isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ipu03000
]
108270975
Transcription factors [BR:
ipu03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
108270975
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
AAR2
Motif
Other DBs
NCBI-GeneID:
108270975
NCBI-ProteinID:
XP_017333551
Ensembl:
ENSIPUG00000003459
UniProt:
A0A2D0RTQ0
LinkDB
All DBs
Position
10:29203256..29398237
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AA seq
805 aa
AA seq
DB search
MPSSAEVVSVGEERGPVAEEDRLRIMSSKQATSPFASGADVGEDGVGQERLVWEKDEGME
PLAAPQLPIHNLLHGKMHGEELPPVSSSVPPESDWDSLVSAQQRMESDSNKVCSLYSFRN
NSTSPHKPEEGARERGDLLGASAFGTPERRKGSLADVVDTLKQKKLEEMTKTEQDETSCM
EKLLSKDWKEKMDRLNTSELLGEIQGTPESLAEKERQLSTMITQLISLREQLLAAHDEQK
KLAASQMEKQRQQMELARQQQEQIARQQQQLLQQQHKINLLQQQIQQVQGHMPPLMIPIF
PHDQRTLAAAAAAQQGFLFPPGMSYKPGDNYPVQFIPSTMAAAAASGLNPLQLQQLYAAQ
LASMQLSPGAKMAPLPQPPNSAGPLSPGPKSEKRSSSPLGQVKEEGTQPLNLSARPKTAE
PVKSPMSPTHSLFPGSKSSPNSQSKSGGIPSPLALGRGSSLDILSNLNSTALFGDQDAVM
KAIQEARKMREQIQREQLQHHQQGMEAKLSALSGLGLNNCRGDKERVHFESLGHHLGKLG
DDGKIGQRVIDLTRPEDLDGSKELNGSADKPQQYYCWPTGGASTTEARVFRESRGRNPNE
PHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMSNQEKQPYYEEQARLS
KIHLEKYPNYKYKPRPKRTCIIDGKKLRIGEYKQMMRSRRQEMRQFFTVGQQPQTQLPIS
SSTGVVYPGAISMTSDCSSNSASPEPTVPVIQSTFGMKMEPSVPSVVPSEPVNGEDDMDM
YEDFEDEPKSDYSSENEAQEPVSAN
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgccatccagtgctgaagtggtgagcgtcggagaggaaagagggccagtggctgaggag
gacagactcagaatcatgtcttccaaacaagccacctctccgtttgcctcgggcgcggac
gtcggtgaggacggagtgggtcaggagcgcctggtttgggagaaggacgaaggcatggag
ccgctggcagcaccgcagctgccgattcacaacctgctgcatggcaagatgcacggcgag
gaactgcctcccgtcagcagcagcgtgccgcctgaatccgactgggacagcctggtgtcg
gcccagcagcgcatggagtcagacagcaataaagtatgttccctctactccttccggaat
aactctacctctccgcacaagccggaggagggggcacgggagcgaggtgacctgctggga
gcctccgccttcggaacgccggagcgccgcaaagggagcctggccgacgtggtggacacg
ctgaagcagaagaagctggaggagatgacgaagacagagcaagatgaaacttcctgcatg
gaaaaactgctttctaaagactggaaagagaaaatggacagactgaacacgagcgagctt
ctgggagaaatacaaggtactccagaaagtctggctgagaaagagaggcagctttcgacg
atgatcacacagctgatcagcctgagagagcagctcctggccgcccacgacgagcagaag
aagctggcggcctcgcagatggagaagcagcggcagcaaatggagctggctcgacagcag
caagaacaaatcgccagacagcagcagcaacttctccagcagcagcacaaaatcaatctc
cttcagcagcagattcagcaggtccagggtcacatgcctcctctcatgatccccattttt
ccacatgaccagcgcactctggctgccgccgccgccgcccagcagggcttccttttcccc
ccaggcatgtcctacaagccaggtgataactacccggtgcagttcattccttccacaatg
gcagctgccgccgcgtcaggactcaatcctcttcagctccagcaactgtacgccgcccag
ctggccagcatgcagctctctccaggagccaagatggcaccactgccccagccacccaat
tctgcagggccactctcacctgggccaaagagtgagaagaggtcctccagcccactgggc
caggtcaaggaggagggaacgcagcccttgaacctctcggcccggcctaagacagctgag
ccagtgaaatcccccatgtccccgacacacagcctgttcccgggcagcaagagcagtccg
aacagccagtccaagagtggaggcatccctagtccactcgctttgggccgaggatcatct
ctggatatcttgtctaacctgaactccacggcactatttggagaccaggatgctgtgatg
aaggccatccaggaggcgaggaagatgagggagcagatccagcgtgagcagctgcagcat
caccaacagggcatggaggctaaactctcggctctctcaggcctcggtcttaacaactgc
aggggtgacaaggaacgagtccactttgaaagcctggggcatcatctgggaaaactggga
gacgatgggaagatcggacagagagtcatcgacctgaccaggccggaggatcttgacggg
agtaaggagctgaatggttctgcagataaaccacaacagtattattgttggccaacagga
ggcgccagcaccaccgaagcccgggtgttcagagaatcgcgaggacggaaccccaatgag
ccgcacatcaagcgacccatgaacgccttcatggtgtgggccaaggacgagcgccgcaag
atcctgcaggctttcccggacatgcacaactccaacatcagcaaaatcctgggctctcgc
tggaaggccatgtccaaccaggagaagcagccgtactacgaggaacaggctcgtctgagc
aagatccacctggagaagtatcccaactacaagtacaagcctcggcccaagcgcacgtgc
atcatcgacggcaagaagctgcgaattggcgagtacaagcagatgatgcgctcgcggaga
caggaaatgcgccagttcttcactgtggggcagcagcctcagactcagctcccgatcagc
agcagcacgggcgtcgtctaccccggagccatcagcatgacgtcagattgctcgagcaac
tcggcaagccccgagcccaccgtgcccgtcatccagagcaccttcggcatgaagatggag
cccagcgtgcccagcgtggtgcccagtgaaccggtcaatggcgaggacgacatggacatg
tacgaggacttcgaggacgagcccaaatcggactacagcagtgagaacgaggcacaggag
cccgtcagcgccaactga
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