KEGG   Ictalurus punctatus (channel catfish): 108271011
Entry
108271011         CDS       T04658                                 
Symbol
kdm4b
Name
(RefSeq) lysine-specific demethylase 4B isoform X1
  KO
K06709  [histone H3]-trimethyl-L-lysine9/36 demethylase [EC:1.14.11.66 1.14.11.69]
Organism
ipu  Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:ipu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:ipu03036]
    108271011 (kdm4b)
Enzymes [BR:ipu01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.66  [histone H3]-trimethyl-L-lysine9 demethylase
     108271011 (kdm4b)
    1.14.11.69  [histone H3]-trimethyl-L-lysine36 demethylase
     108271011 (kdm4b)
Chromosome and associated proteins [BR:ipu03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    108271011 (kdm4b)
SSDB
Motif
Pfam: JmjC zf-HC5HC2H_2 Tudor_2 zf-HC5HC2H PHD_2 JmjN PHD_4 DUF4537 53-BP1_Tudor
Other DBs
NCBI-GeneID: 108271011
NCBI-ProteinID: XP_017333647
Ensembl: ENSIPUG00000024981
UniProt: A0A2D0RT18
LinkDB
Position
10:15082753..15157568
AA seq 1105 aa
MSEETAPDEAMNSTPAPTLQNPAVPSTPLDFDPAPSPHLESSEPEPASAPPPGGNLAFKI
MTFRPTIEEFRDFAKYITYMETQGAHRAGLAKVIPPKEWKPRRSYETIEDMVIPAPIMQV
VTGQSGLFTQYNIQKKSMTVGEYRKLANSKRYCTPQHKDFDDLERKYWKNLTFVSPIYGA
DISGSLYDPDITEWNIGHLNTLLDMVEQECGIVIEGVNTPYLYFGMWKTTFAWHTEDMDL
YSINYLHFGQPKSWYAIPPEHGKRLERLAKGFFPGSSQGCDAFLRHKMTLISPSILKKYS
IPFDRITQEAGEFMITFPYGYHAGFNHGFNCAESTNFATLRWIDYGKMATQCTCRKDMVK
ISMDVFVRCLQPDRYELWKKGKDTTVLDHQRSTSLTSPELEHWRKNRVTFREKQLRRAQQ
KIKQIRRLKPEELKLLSDEGIELDVADYQKRLEEKEAQRKQQREEKMTREAMLTLEALER
EEQEAALREGAASQKPEAGKEPEQADEQEQKKKKKKKKVKSPEEDSFEQAFKPYALSKKN
EAQSNGGAAVGSSDSSLQANLYPKMKMKVEVKKSRRHPFSKPPMRTPTFIVKQEASSDEE
MYSGLSVGSAAEQEVKKQEQCHLWQTLSPDFVAEKQFNAGMATLEPHCAVCTMFCPYTQL
HKDSPPASDVSGVPVSRCGEQTRPLVPEMCFSAGMANTEPLPSSAETSMLLSCSCCNLQV
HASCYGVKPDTPQESWKCSRCCAVAWTAACCLCNLRGGALKMTTENRWVHVICAIAVAEA
RFVNVVERGPVDVSAIPDTRKSLKCVFCHKSTKQICGACIQCSHENCSTSFHVTCAHLAG
VVMKPADWPYVVSVSCHKHKQINVKQAKVTSRDLSVGQQAIGRSSDGWFYRCTIIGIGSQ
TYYEVNFDDGSYCDNVYPENVLSHDCLHNGPPELGELMVINTIDGRVLNASFVKEHVHKF
YQVEFQDETQLLLKQSEIHSLHQELPKRVLSRLVTMNTEDSQDKVGDEPQAAKRPRLPIP
PTTAAVESLDARLLLQGSSSVTSYSGFSVNPGNSNTQSTPTSTLVPASPADESYTHSSSY
VAYMESLLNSDFPPEDGEQAQGSMY
NT seq 3318 nt   +upstreamnt  +downstreamnt
atgtcggaggaaactgccccagacgaagccatgaactccactccagctccgaccttacag
aaccctgcggttccttcaacacccttggactttgatccagctccaagcccacacttggag
tcctcagagcccgaaccagcttctgcaccaccaccgggtggaaatttagccttcaagatc
atgaccttcaggcccaccattgaggaattccgtgactttgcaaagtacattacgtatatg
gaaacccaaggagctcatcgtgcaggcttagctaaggtcattcctcctaaagagtggaag
cccagacgctcctacgagaccatcgaagatatggtcattcctgcgcccatcatgcaggtg
gtcaccggtcagtctggacttttcactcagtacaacattcagaagaagtccatgactgtg
ggcgaatatcgcaaactggccaacagtaaaaggtactgcactcctcagcataaagacttt
gatgatctggagaggaaatactggaagaatctgacattcgtgtccccgatctatggtgca
gacatcagcggctcactatacgatcctgacataacggagtggaacattggacatctgaac
acgctgcttgacatggtggagcaagagtgtgggatcgtgattgagggcgttaacaccccc
tacctctacttcggcatgtggaagaccacatttgcctggcacacggaggacatggacctc
tacagcatcaactacctgcacttcggccagcccaagtcttggtacgccattcctcctgaa
cacggcaagaggcttgaaagactggcaaaaggctttttccccggcagctctcagggatgt
gatgcctttcttcgtcacaagatgacccttatctctccctccatcctgaagaagtacagc
atcccttttgatcgaatcacgcaggaagcgggcgagttcatgattacgttcccgtatggc
taccatgcagggttcaaccacggcttcaactgtgccgagtccaccaacttcgccacgctg
cgttggatcgactatggcaaaatggccacgcagtgcacgtgtcggaaggacatggtgaag
atctccatggacgtgtttgtacgctgcttgcagccggaccgctatgaactgtggaagaag
ggcaaggacacgactgtcctggaccaccagaggtccacctcactgaccagccctgagctg
gagcactggaggaagaacagagtgacctttagagaaaaacagctccgcagagctcagcag
aaaataaagcaaatacgccggctgaagcctgaggagctgaagttgctgtcggacgaggga
attgagctggacgtggctgattatcagaagaggctggaggagaaggaggcacagaggaaa
cagcagagggaggagaagatgaccagagaggccatgctcactctggaggcactggagagg
gaggaacaggaggcagcactccgagaaggagcagcttcccagaagcccgaagctggaaag
gagccagagcaggcagacgaacaagagcaaaagaagaagaaaaagaagaaaaaggtaaaa
tcacctgaggaggacagcttcgagcaggcgttcaaaccttacgcattatccaagaagaac
gaggctcagagcaacggaggcgcagccgtcggcagctcagattccagcttacaggcaaac
ttgtacccgaagatgaagatgaaagtggaagtgaagaagagtcgcaggcatccgttcagc
aaaccacccatgcgcactcccactttcattgtcaaacaggaggcttccagcgatgaggaa
atgtactcggggctgtcagtaggcagtgcggcggagcaggaagtgaagaagcaagagcag
tgccacttgtggcaaaccctttcacctgacttcgtggcagagaagcagtttaatgctggc
atggcaactctggagccacactgcgctgtctgtacgatgttctgcccctacacacagctc
cataaggatagcccccctgcctccgatgtctctggtgttcctgtgtctcggtgtggtgaa
cagactcggccccttgtgcctgagatgtgtttcagtgccggcatggcgaacacagagccg
cttccctccagtgctgagacgagcatgctgctctcctgctcctgctgcaacctgcaggtt
catgccagctgctatggcgtaaagcctgacactccacaggaaagctggaagtgttctcgc
tgttgtgcagtggcctggacagcagcctgttgtttgtgtaatctgcgaggaggagctttg
aagatgaccacagagaacaggtgggtgcacgtgatttgtgccattgcagtggctgaggct
cgctttgttaacgttgtggaaagagggccagttgacgtgtccgccatcccagacaccagg
aaaagtctcaagtgcgtcttctgccacaagtccacgaagcagatctgtggggcgtgtatc
cagtgttcgcatgagaactgctccacttccttccacgtcacctgtgcgcacctggccggc
gtggtgatgaagcccgcagactggccgtacgttgtgtctgtctcctgtcacaaacataaa
cagatcaacgtgaagcaggcaaaggtgacctcgcgcgacctctctgtgggtcagcaggcc
atcggcaggagcagcgacggctggttttatcgctgcaccatcattggcattgggtcacag
acctactacgaggtcaacttcgacgacggctcctactgtgacaatgtttaccccgagaat
gtgctgagtcatgactgtttgcataatggccctcctgaactgggtgagctgatggtcata
aacacgatagatggacgagttcttaacgcctccttcgtcaaagaacacgtgcacaaattt
taccaggtggagtttcaggatgagacccagctgttgttgaagcagagtgagattcactcc
ctccatcaggagctgcctaagagagtgctctctcgtctggtgacaatgaacactgaagac
tctcaggacaaagtgggtgacgagcctcaggctgcaaagcgtccgcgtttgcccattccc
cccaccacggcagctgtggagtccctcgatgcccgtctcctgctccaggggtcctccagt
gtcacctcttactcaggcttcagtgttaaccccggcaacagcaacacccaatcaacaccc
acttccaccctggtgcccgcctctcctgccgatgagagctacacacacagctcaagctac
gttgcctacatggagtctctgctcaactcggacttccctccagaggacggtgaacaggca
caggggtccatgtattag

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