Ictalurus punctatus (channel catfish): 108271013
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Entry
108271013 CDS
T04658
Symbol
si:ch73-63e15.2
Name
(RefSeq) protein strawberry notch homolog 2 isoform X1
KO
K26273
protein strawberry notch
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ipu03036
]
108271013 (si:ch73-63e15.2)
Chromosome and associated proteins [BR:
ipu03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
108271013 (si:ch73-63e15.2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_34
Helicase_C_4
SBNO
ResIII
Helicase_C
DEAD
Motif
Other DBs
NCBI-GeneID:
108271013
NCBI-ProteinID:
XP_017333649
Ensembl:
ENSIPUG00000000537
UniProt:
A0A2D0RT19
LinkDB
All DBs
Position
10:13642000..13712371
Genome browser
AA seq
1410 aa
AA seq
DB search
MPFFSASSAMEGQNCSHTEGTQMDTGMLGLASSAMESPLWTPWSFSPTPFSLHWPTQSGS
QQHYSSSTPGMHMDISSHSTFPDLDISYSEDFFQDLVCIDDLSNLSNDSLSEYVDDSLPT
VPTIWDISTPAQNQELNSRRFQGLNSLEDITAIISTPHLGSIQSAQSQPEEEEDIEEEET
EELGHVDTYADYKPSKSTIGNSHPDRVVETNTLSSVPPPDISYTLSIPEAIIDSNVLSAL
QLEAIIYACQQHEVILQNKQRAGFLIGDGAGVGKGRTVAGIILENYLKGRRKALWFSVSN
DLKYDAERDLQDIGAPNILVHALNKIKYGDTATSEGVLFATYSALIGESQAGGQHRTRLK
QILDWCGPDFDGVIVFDECHKAKNATSTKMGKAVIQLQNKLPLARVVYASATGASEPKNM
IYMSRLGIWGEGTQFKTFDDFLHAIEKRGVGAMEIVAMDMKVSGMYIARQLSFSGVSFRI
EEINLDDDFTLVYNKAAKLWAEALAVFTQAADFLGMVSRKSLWGQFWSSHQRFFKYLCIA
SKVRCLVELAKKELEAGKCVVIGLQSTGEARTREVLDENEGHLDKFVSAAEGVFQSLVQK
HFPSEKQRREKGAASKRKRKPKGRQSKCPRQGADAKSVINISDDSSTESDGVDSDSNSSP
DSLQDNGDDVIFITQTNCHAARLEEMKQSLLIKIAELGKELPLNTLDELIDKFGGPEKVS
EMTGRKGRVVRRLDGSVRYESRAEHGHTIEHINIKEKDRFMNGEKLVAIISEAASSGISL
QADRRVKNQCRRVHMTLELPWSADRAIQQFGRTHRSNQVTAPEYIFLISELAGERRFASI
VAKRLESLGALTHGDRRATESRDLSKYNFENKYGNRALEKITKAILGHIESKVAPPKGYP
GGDAMFFRDMKQGMMDVGIFCKEARLGINPEKDCTITKFLNRILGLEVHKQNSLFQYFSD
NFEYLIEKDKKEGKYDMGILDLAPGNDEISNETQEKFLTPGNPQEGQVILYKISVDRGMP
WEEALRKAHTLSNPDEGFYISHKLRGSHPCVLLAEQGRGHNLTVYKPNVGKQKQPENLEK
IQKKYHKVTPEDAKESWENQFTFSLRKCSHANWNGRCKKVDEGQECLQGMRLRQYHVLCG
ALLCVWKRVADVVADITSSSILQIVRLKTREHKQVGIKIPENCVAQVRDELDRMDKDVKK
RRQEKELKAQNQWRDEQRMLEERRRDISFTLYPSPLFGYPDGVLDLTMPGLSHLSTHSTG
TDVLSGPVTDFSMVFPQEHQQQQSQPESAHQELLNFLNSLPEQPQCHSGLPSSSSDSLHA
AIPAPTSLFPTSTIHPSSSSSSLFSPSLTPSSSSSSLPLFSSLSPSDQHPFANCSDDTAI
DAKEVLSSMLRSSSDQSVIHFRVPESEHLS
NT seq
4233 nt
NT seq
+upstream
nt +downstream
nt
atgccttttttctctgcttcatctgccatggaagggcagaactgttctcataccgaggga
acacagatggatactggaatgttgggcctggcttcttctgctatggagagtccactttgg
acaccgtggagtttctcaccaacgcctttcagcttgcattggcctacacagtctgggagt
cagcaacactattccagcagcactcctgggatgcacatggacatttccagccattctacc
tttcctgatctggatatttcctacagtgaagacttctttcaggaccttgtatgtatagat
gatctgtccaatctgtctaacgactccctgtctgagtatgtagatgacagcttgccaact
gtacctaccatatgggacataagtacaccagcacagaatcaggagctgaattccagacgg
tttcagggtttaaacagtttagaagatatcactgctataatcagcacaccacatctgggg
agcattcagagtgcacagtcacagccagaggaggaggaggacatagaagaagaggagaca
gaagagctaggccatgtagacacctacgctgactacaaaccttcaaaatccactatagga
aactcgcatcctgaccgtgtagttgagaccaacactctttccagcgtccctccacctgac
atcagctacactctctccattcctgaggccatcatagacagcaatgtgctctcggccctg
cagctcgaggccatcatctatgcctgccaacaacatgaggtgatcctacagaacaagcag
agggcaggttttctgataggagatggggctggagtgggaaagggccgcacggtggccggg
atcatccttgagaactatctaaagggaaggaggaaagcactttggttcagcgtatccaat
gacctcaaatatgatgctgaacgagatcttcaggacattggtgctcctaatattctagta
catgccttgaataagataaagtatggagacacagctacctcagaaggtgttctgtttgct
acctactcggctctgattggagagagccaggcaggaggccaacatcgcactagactcaag
cagatcctggattggtgtggacctgattttgatggtgtcatcgtgtttgatgaatgccat
aaagccaaaaatgccacgtccaccaaaatgggcaaagctgtgatacagctacagaacaag
cttcctctggccagggtggtgtacgccagtgccacaggtgcctccgagccaaagaacatg
atctacatgagtcgtctgggcatctggggagaaggaacacaatttaagacatttgacgac
ttcctacatgctatagaaaagagaggtgtgggtgccatggagattgttgccatggacatg
aaggttagtgggatgtacattgcacggcaactgagcttctcaggagtgtccttccgcatc
gaagaaatcaacttggacgatgacttcacactcgtctacaacaaagccgccaaactgtgg
gcagaagccttggccgtgttcacccaggcagctgatttcctcggtatggtgtccaggaag
tctctgtggggtcaattctggtcttcccaccagcgctttttcaaatacctctgcattgcc
tccaaggttcgctgtctggtcgagctggccaagaaggaattggaagctggcaagtgcgtt
gtgattgggctgcagtccacgggtgaagcgcgaacccgagaagttcttgatgaaaatgaa
ggacacctcgacaaatttgtttctgctgcggagggtgtgttccagtccttggtccaaaag
cacttcccttcagagaaacagcgaagggagaaaggagcagccagcaagaggaaacgtaaa
cccaaaggacggcagtcgaagtgccccaggcagggtgcagatgccaaaagcgtcattaac
atcagcgatgatagcagcacagagtctgatggagtggacagcgactccaattcatcgcca
gattcactacaggacaatggcgatgatgtcattttcattacacaaaccaactgtcatgct
gctcgtttggaggagatgaagcaaagtctccttattaaaatcgctgaacttgggaaagaa
ctacctctgaacacattggatgagctcatagataaatttggaggtccggagaaggtttca
gagatgacaggacgcaagggcagagtggttcggcggctagatgggagtgtgcgctatgag
tctcgagctgagcatggccacaccattgagcacatcaacatcaaagaaaaggatcgcttc
atgaatggagagaagctggtggctataatctctgaggcggccagttcaggaatctctttg
caggcagacaggcgggtaaagaaccagtgcaggcgagtgcacatgaccctggagttgccc
tggagtgctgaccgggccatccagcagtttggtcgcactcaccgctccaaccaagtcaca
gcaccagagtatatcttccttatctctgaactggcgggcgaaagacgctttgcttctatt
gtggctaagaggctggagagcctgggagctctaacgcacggtgacagaagagcaacagag
tctagagatttgagcaagtacaactttgaaaataaatatggtaacagggcattagagaag
atcaccaaagccattctgggtcacattgagagtaaggtggcccctcccaagggctatcca
ggtggtgatgccatgttcttcagagacatgaagcaaggcatgatggatgttggcattttc
tgcaaggaggctcgccttggcatcaaccctgagaaagactgcaccattactaagttcctc
aatcgtattttgggtctggaggtgcacaagcagaactctctctttcagtacttcagtgac
aattttgagtacctgattgaaaaggacaagaaggaaggcaaatatgatatggggattttg
gatctggctcctggtaatgatgaaatatccaacgagactcaagagaagtttctgactcca
ggcaacccacaggaaggccaagtcattctctataagatcagtgtcgacagaggcatgccc
tgggaagaggctctcagaaaggctcacacactcagcaacccagacgaaggcttctacatc
tcccacaagctgagagggagtcacccatgtgtgctgctggccgagcagggcagaggtcac
aacctgactgtctacaaacccaatgtgggcaaacaaaagcaaccggagaatctggagaaa
atccaaaagaagtaccacaaggtgactccagaggatgcgaaggaaagctgggagaatcag
ttcacgttctccttaaggaaatgtagccatgccaactggaacgggaggtgcaaaaaggtc
gacgagggccaggagtgtttgcagggtatgcgcttgcggcagtaccacgtcctttgcggt
gctcttctgtgtgtgtggaagcgtgtagctgacgtggtggcagacatcaccagctccagc
atcctgcaaatcgtacgcctcaaaaccagggagcacaaacaagtgggaataaagatccca
gagaactgtgtggctcaagtgcgagatgagctggaccgtatggataaggatgtgaaaaag
aggcgccaggagaaagagctgaaggctcagaaccagtggcgggatgaacagaggatgtta
gaagaacgtcggagggatatttctttcaccctttaccctagccccttattcggttaccct
gatggtgtcctggacctgacaatgcccggcctttctcacctttccacacacagcacggga
acagacgtcctctctgggcctgtcaccgatttcagcatggttttcccacaggagcaccag
cagcagcaaagtcaaccagaatctgcgcatcaggaattgttaaactttctcaactcgctg
ccagaacaaccacagtgccactctgggcttccctcttcttcatcggactctttacacgct
gccatacctgccccaacgagcctcttccccacctccaccatccatccttcctcctcctcg
tcatcccttttctctccttcactcactccatcgtcttcttcttcttcactgccactcttt
tcctccctgtcgccgtcggaccagcacccatttgctaactgcagcgacgacaccgccatc
gacgccaaagaggtgctgagcagtatgctgaggagcagctcagaccagtctgtcattcac
ttcagagtacccgagtcagagcatctgtcctaa
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