Ictalurus punctatus (channel catfish): 108271105
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Entry
108271105 CDS
T04658
Name
(RefSeq) rho guanine nucleotide exchange factor 18 isoform X1
KO
K21066
A-kinase anchor protein 18
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
108271105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ipu04131
]
108271105
Membrane trafficking [BR:
ipu04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
108271105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH_16
RhoGEF
C1_1
PH
PH_13
SOS1_NGEF_PH
Atrophin-1
DUF3915
Prok-RING_1
PHD_2
C1_2
Motif
Other DBs
NCBI-GeneID:
108271105
NCBI-ProteinID:
XP_017333870
Ensembl:
ENSIPUG00000024688
UniProt:
A0A2D0RV82
LinkDB
All DBs
Position
10:complement(17245385..17320405)
Genome browser
AA seq
1519 aa
AA seq
DB search
MLGLSVFLLLSCLNVFSMADSLLNHSWPSFSKFWMKRWSFKRGSESKPCTRPSATVSGMR
SSSSPSSDSFFSSTPEDHSSCLVESDFECGTDDLLDLNSSLRDSEYFRDLQSRPGGECAP
SERPLSVFIDPGDQTQLSSGLFFYPSPTLHCGSYVENRSPSHSKTNLLSDQGEKMESAES
LDEICVDDLERDNFPILVRSMSTSRRHSSDIPLNPLGLGRRFSLDTRSIDSDGERDDQSQ
SQSSVEEFSTSGETELPKSPQPSTPGRMVYSRSEIVSSDEKSQAERVSRILETSKQAARA
AGEEHDSDENLRSAEGQCHMLMVQKVLHELKLYHWANRVTSSADRKENVTWYEFLSIENE
EEEERMERTEKGTKVKRTLSSLRNRMTGSFNKDKGKNREKGQQKERDREREKEKEKERER
ERELKESTCAVSSSCNGHQFVRGSFSSRATCSLCSKTLQRKHGLQCVNCAVNVHKSCKSL
LPECSNSKNKSKDFALKSQAAAQPCSQASREPCLPSDGAIRPATGMTVLPRGASGQQNAH
STNLTLSHNSSSSSITGEMDEVDAFRVKRHTDDTISITPSTAESVIVEDAYYNNVRAELD
SMAQDFEVESWSLAVDQHFLKKHSKEVIKRQDVIYELIQTEVHHVRTLKIMLLVYMHELR
ETLQLDERRLDCLFPQLEILLKLHRTFLSRLQERRQDTLEPGSDCNYVIHSVADILSDQF
SGELGERMKESYSAFCSHHTEAVNYYKEQLQNNKKFQNHIRKINNLSVVRRLTIPECILL
VTQRITKYPVLVERMLQYTEADSEEHKELARALSLIKGVLVHVDEQVSLSEKETRLREIA
AKMEPKAFGKIKDGCVFRKEDVTQGKRRLLHEGTVNWKAASGRLKDILAVLLTDILLLLQ
EKDQKYIFSAVDGKPSVISLQKLIVREVAHEEKAMFLICASSNEPEMYEIHTSSKEERNT
WISHIRQAVDSCPHKEERLLSTEEEGARQQRFREIQEHLTVKDAQVRQALTDKLRLYTDL
AVCVGVVEDTGTRHHLLLRGDASELQQGEQLLKGAITEVENLQNILVSSARDFPQTEENQ
TSNSLPRRAGTFGGYDSTVSLLQKYGSMKKHSVGAGKSRERSQRASSDPQLKEMCASQGL
EEPDNLSLPSLNMICSRFPNTEFSDRVLLLSQQLYSLQAIVAQQDSVIELQRASLCLAER
QRGTDVLLEQEKQRNLEKHREEMAHFQRVQAQQQQEQERWERERARQLKQNEAEQLRLQE
REDVCRKLEDRLAQERQELQNQRQKYQQDLERLRESTRAVEKEREKLEQQRKMKKRNTAP
STATPYGPDTVQLPTSSSFNGDILGSSGMDSLLQSFSQLRSTASLSAADYSERTDMPQRR
ESSATLTAKTEVPIHLVSTTNQLHKQGGVQQQIPIKLSTLKSKDKSSKSKGSHRSDSSAS
VDMKQVLSLKLTSRETESSVKARRSVSPNQQPQPAPPPITDPPISGDKYTPEPLKAQNQS
LPQSCPLPDDKDKEEVIFF
NT seq
4560 nt
NT seq
+upstream
nt +downstream
nt
atgttggggttatctgtgtttctcctgctctcctgcttgaatgtgttctcgatggctgat
tctctcctcaaccactcctggccgtccttctccaagttctggatgaaacgatggtctttt
aaaagaggttcagagagtaaaccatgcacacggccaagtgctacggtctcagggatgaga
tcttcctcctcaccttcatccgacagcttcttcagcagcacacctgaagatcacagttcc
tgtttagttgagagtgatttcgagtgcgggacagacgacttattggacctgaactcttct
ctgagagactctgagtatttcagagacctgcagtccagacctggtggggagtgtgcgccc
tctgagagacccctgtctgtatttattgacccaggggaccaaacacagctcagttctgga
ctattcttctacccatcacccacgctgcactgtggatcgtacgtagaaaatcgctcacca
tcccacagtaagacaaacctgctgtctgatcagggagagaagatggaatcggcagagagc
ttggacgagatctgcgtggatgacttggagagggacaatttccccatcctggtcaggtct
atgtccacctcgcggagacacagctcagacatcccactgaatccgcttggcctggggaga
aggtttagtctggacaccaggagtatagacagtgacggggagcgagatgatcagagccag
tctcagagctcagtggaggagttctctacatccggagaaacagagctccctaaatcccca
cagccttccaccccagggaggatggtgtattcccgatctgagattgtatcatcagatgaa
aagtctcaagctgagagggtctcacgcattctggaaacttctaaacaggcagcccgagct
gccggagaggaacatgattcggatgagaatttgcgctcagcagaaggacaatgtcacatg
ctgatggtacaaaaagttctgcatgagcttaagctgtatcactgggccaatcgcgtaacc
tcaagtgctgacaggaaagaaaatgtcacctggtatgaatttctctccattgagaatgag
gaagaggaggagagaatggagaggacagagaagggcacaaaggtgaaacgcactctgagc
tcgctgaggaaccgaatgaccggatccttcaacaaagacaagggtaagaaccgtgaaaag
gggcagcagaaagagagagacagagagagggaaaaggagaaagagaaggagagagaaagg
gaaagggagctgaaggagagcacttgtgctgttagcagcagctgtaatggccaccagttt
gtgcgtggctctttttcgagccgagccacatgctcactgtgcagcaagactctgcagagg
aagcatggcctgcagtgtgtcaattgtgctgttaacgttcacaaaagctgtaagagtctc
ctgcctgagtgtagcaacagcaagaacaagagtaaagattttgccctgaagagccaagcg
gctgctcagccctgtagtcaagcctccagggagccgtgcctcccctccgatggcgctatc
cgcccagctacaggcatgaccgtcttgccccgaggagccagcgggcagcagaacgctcac
agcaccaacctcactctcagccacaacagtagctcgagttctattacaggggagatggat
gaagtagacgcattcagagttaaacgccacactgacgacaccatctcaatcactccgtct
accgccgagtccgtcatcgtggaagatgcatactacaacaacgtgcgagcagagctggac
tcgatggctcaggactttgaggtggagtcatggagtttggccgtggatcagcatttctta
aagaaacattccaaagaagtgattaagagacaggacgtgatatacgagctgatccagaca
gaggtgcaccacgtgcgcacgctgaagatcatgctgctagtgtacatgcatgagctgcgt
gagactctgcagctggacgagcgcagactggactgtttattcccgcagttggaaatcctg
ctgaaactacacagaactttcctgtcccgactccaagagcgacgccaagacacactggag
ccggggagtgactgcaactacgtcatccacagcgtggcagatatcctcagtgaccagttt
tcaggtgaactcggagagcggatgaaggaaagctacagcgcattctgcagtcaccacact
gaagccgtcaactactacaaagagcagctgcagaacaacaagaaatttcagaaccatata
aggaaaataaacaacttgtccgttgtgcgacggctcaccattccagagtgcatcctgctc
gtcacacagcgcatcaccaaatatcccgttctcgtggagcgcatgctgcagtacacagaa
gccgactctgaggaacacaaggagctggcacgagctctgagtctgatcaaaggtgtcctc
gtgcacgtggatgaacaggttagtctgtccgagaaggagacacgcctcagagagatcgcc
gccaagatggaacctaaagcattcggcaagatcaaagatggctgcgtcttcaggaaggag
gacgtgacgcagggcaaacggaggctgctgcatgagggcacggtcaactggaaggccgcc
tccggcagactcaaggatatcctagctgtgctgctaacagacatcctgctcctgctacaa
gaaaaggaccagaaatatatcttctctgctgtggacgggaaaccgtcggtgatctcccta
cagaagctaatcgtcagagaggtggcacatgaggaaaaggccatgttcctcatatgcgct
tcctccaacgagcccgagatgtacgagatccacacgtcctctaaagaggagcgcaacacc
tggatctcacacatccgccaggctgtcgacagctgtcctcacaaggaagagagactcttg
tctactgaagaggagggagcaagacagcaacgcttcagagaaattcaagagcatctgacg
gtgaaggacgcgcaggtcaggcaggctctcacggacaagctgcggttgtatactgacctg
gctgtgtgtgtgggtgtagtggaggacacaggaactcgacatcatcttctgctgcgagga
gatgcttcagaactccagcagggggagcaactgctcaagggagccataacagaggtggag
aacctgcagaacattctggtgtccagtgcgagagattttccacagaccgaggagaatcag
acttccaactcactgcccaggagagcaggaacgtttgggggttacgacagcacagtcagt
ctactgcagaagtacggcagcatgaagaaacactcagttggagcaggaaagtctagagag
aggagtcagagagccagttcagaccctcagcttaaagaaatgtgcgccagtcaaggactg
gaagagcctgataacctttctttacccagcttgaatatgatctgctccagatttccaaac
acagagttctctgaccgggttctcctgctttcccagcagctctacagtctgcaggcgatt
gtcgctcagcaggacagcgtgattgagctgcagcgggcatctctttgtttggcagagcgc
caacgcggtacagatgtgctcctcgagcaggagaaacagaggaacctggagaagcaccgt
gaggagatggctcatttccagcgcgtccaggcacagcagcagcaggagcaagagcgctgg
gagcgtgagcgagcgaggcagctgaaacagaacgaggctgagcagctccggctgcaggag
cgagaggatgtgtgcaggaagttggaggacagacttgcccaggagagacaggagctgcag
aaccagaggcagaaataccagcaggatcttgagagattacgagaatccacgcgggctgtg
gagaaggagcgagagaagctcgagcagcaaaggaaaatgaagaaacgcaatacagcaccc
agcacagcaacaccatatggccctgacacagtgcagctccccacgtcctccagttttaat
ggcgacatcctgggaagctccggcatggattcactcctccagtccttctctcagctccgc
tccaccgcctccttatctgctgctgattactccgagaggacggacatgccgcagcgccgg
gagagtagcgccaccttgaccgccaaaaccgaggtgcccatccacctggtcagcaccacc
aaccagctgcacaaacagggcggagtccagcagcagattcccatcaagctgtccacactg
aagagcaaggacaagagcagcaaaagcaaaggctcgcatcgctcagacagctcagcttca
gtagacatgaagcaggttctctctctgaaactgacgtccagagaaacggagagttctgta
aaagctcgccgctccgtcagtcctaatcagcagcctcaacccgctccgcctccgattaca
gatcccccaatcagtggagataaatacactcccgagcctctgaaagcacagaaccagagc
ctcccgcagtcctgccctctccctgacgacaaagacaaggaggaagtcatctttttctga
DBGET
integrated database retrieval system
