Ictalurus punctatus (channel catfish): 108271112
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Entry
108271112 CDS
T04658
Name
(RefSeq) Hermansky-Pudlak syndrome 3 protein isoform X1
KO
K20190
Hermansky-Pudlak syndrome 3 protein
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ipu04131
]
108271112
Membrane trafficking [BR:
ipu04131
]
Endosome - Lysosome transport
Others
BLOC-2 complex
108271112
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HPS3_C
HPS3_N
Motif
Other DBs
NCBI-GeneID:
108271112
NCBI-ProteinID:
XP_017333886
Ensembl:
ENSIPUG00000002493
UniProt:
A0A2D0RUN0
LinkDB
All DBs
Position
10:11397730..11415176
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AA seq
1040 aa
AA seq
DB search
MVHVYNCHPFASQRIVPAAQEPGLVCCGGGALFVVSAGGCKIEAYHMQQEECPLICRFST
MGIVHRIVYSQIGDYLVTIEEKNGATYLRAYTNWRYQAAEKKRVGVRLLGHLMRGPVHHG
TPKEQMEIVEMPLSETPLCTACCSITGALLVACAKSLVLFGLKRQSLSDQLDALDFERLL
ILYISGLSPLQVALCGGYVALQTELEVLVVKLENLEKTCASNEVHTQLPHDDMAAAGVTE
NDVKKEPQSPLESDDFFVFPKHLEMLGEKAKDCGVSLSLEWTGMETEASDTMGVTYILYR
RFAPDFFQGCSVEETRLHSLQLHPMYTGNPDVSSDLEKSDPACMFCFFSLPNAGYMYSLI
NTVELISTYQYPEKARQALLCNQFLHVITQNSLQCFSVRCSAVAARVEDPYIDTTMKACP
PFTMEVSALRIQLFIGLKSLCHDGNRIVLLTAADVETKEEIERATRRSIKSKEQKSLAGI
FLAVGIDPTTSPALESFLSRSFLSRKTSVSKLKEPSETGHGWNLYVISTISTLQLYREMV
EYSKRYEQTSPASQNCIHLLSEAHLLLRASLLCPTTDRAEIQEAFQESCAQLGDCFSRQD
KRDCHLALPYYKMSGLSVTDVIQRNMAMCRGPVPNYGKGFLFFLKHSLYEETMEELTEET
ANTVLEIFSQAEPGQLPYVVSSSFMKNANPACARAHLEQLELGGAPSVTVTLCKAAQALR
LGDLHYYQQQMDRHAEMLQVYGFIEEPKLLVHHRGKSVVPTQLAQHLRDTQDGLLVAAIV
ALHENSKVKLEEAELFFQELCKDGTEPQSIPQLLVDFWEALLVASSQESIIQELLFHLTS
VYIERITCREHSGIKALKTAEDLINSCSHYGPLFPWLSILTPAQFNITHDHQEDLHKLQS
LLCGPTLDVSSIVPLLEQLPDADNAGLSVHMLCATRLGQHESTIKKLLDRCPQAIISYAT
HELHGNKMALWWQKLFPELCERTRLSSGDNSVLITALKETLAVVAMELNPLEFLDLLPDD
GTAHFFLPHLLKCSQRHLLT
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atggtccatgtgtacaactgccacccgttcgcgtctcagcggatcgtccccgcggcgcag
gagcccgggctggtgtgctgcggcgggggtgcgctgttcgtcgtgtccgctggaggatgt
aaaatcgaggcgtatcacatgcagcaggaggaatgtcctctaatctgccgcttctccacc
atgggcatagtgcacaggattgtgtacagtcagatcggggattacctggtcaccattgaa
gagaagaatggtgccacctacctgagggcttacaccaactggcgttaccaagcagctgag
aagaagcgtgtaggtgttcgcttgctcgggcacctcatgcgcggcccagtccaccatggc
acccccaaggaacagatggagattgtagagatgccattatcagagacaccgctctgtact
gcctgctgctccataacaggtgccctgctagtggcctgtgcaaagagcttggtgctgttc
ggtctgaagcggcaatcgcttagcgatcaactcgacgcccttgacttcgagaggctcctc
atcctgtacatttctggtttgagcccgttgcaggtggcactctgtggtggctacgtggcc
ctgcagacagagctggaggtgctggtggtgaagctggagaacctggaaaagacatgtgca
tccaatgaagtgcatacacagctgcctcatgatgatatggctgcagctggtgttactgaa
aatgatgttaaaaaggaaccacagagtccccttgagtctgatgacttctttgtgttcccg
aagcatctggagatgctgggagagaaggcgaaggattgtggggtgtctctgtctttagag
tggactgggatggagacagaggcaagcgacaccatgggagttacctacatcttgtacagg
aggtttgccccagatttcttccagggctgcagtgtggaggagacacgcttacactccctg
cagctccaccccatgtacactgggaatccagatgtaagcagtgatctagaaaagagtgat
cccgcctgtatgttctgtttcttttctctgccaaatgctggttacatgtacagtctgatc
aacacagtagagctcatctccacctaccagtacccggaaaaggcccgtcaggctttgcta
tgcaaccagtttctacatgtcatcacacaaaattctctgcagtgtttctctgtgagatgc
agtgctgtggctgctcgagtcgaggacccctacattgacaccaccatgaaggcctgtcct
cctttcactatggaagttagcgccctccgtattcagctgttcatcggtctgaagtctctg
tgtcatgacgggaatcgcattgtgctgctcacagctgctgacgttgagaccaaagaggag
atcgagcgagcgactagaagatctatcaaatcaaaagagcagaaatcactggcagggatt
ttcctagcggtaggtatagatccgaccaccagcccagctctggagagcttcctgtccagg
tccttcctgtccaggaagacctcagtgtcgaagctaaaggagcccagtgagactggccat
ggctggaacctgtacgtgataagcaccatttccacgctgcagctctacagagagatggtg
gagtacagtaagcgatatgagcagactagcccggcgtcccagaactgcattcatctgctg
agtgaagctcacctgctgctcagagccagtcttctctgtccgaccacagacagagccgag
atccaggaagccttccaggagagctgtgcccagctgggagactgcttcagcaggcaggat
aaacgggattgtcacttggctcttccatactacaagatgtctggcttgtcggtgacggat
gtaatccagagaaacatggcaatgtgcagaggtcctgttccaaattatgggaaaggcttc
ctcttcttccttaagcactctctctatgaagaaaccatggaagagctcaccgaagaaact
gctaacaccgtgttggagattttcagtcaggccgagccaggccagctcccatatgtagtg
agcagctcattcatgaagaatgccaatcctgcttgtgcacgtgcacacctggagcagctg
gagctcggtggtgccccatctgtcacagtcacactgtgtaaggctgctcaggcactgcgc
ttgggagacctgcactactaccaacagcaaatggatcggcatgctgagatgctgcaggtg
tacggcttcatagaggagcccaagcttcttgtgcaccacagagggaagtccgtggtgccc
actcagctagcacagcacctccgagacacccaggacggcctgctggtggctgccattgtg
gcgcttcatgagaacagcaaggtcaaactggaggaggctgaactgttctttcaggagttg
tgtaaggatggcacagagcctcagagcattcctcagctactggtggacttctgggaggct
ttgctggtggcttcgtctcaggaatcgatcatccaggagcttttgttccacctcacctct
gtatacatcgagcgcatcacgtgcagagagcactcaggcattaaagcactcaaaacagct
gaagacttgattaactcctgctctcactatggaccactgtttccatggttgagcatcctg
actcctgctcaatttaacatcacacatgaccaccaagaagaccttcataaactccagtct
ctgctgtgtggcccaacactggacgtgtcctccattgtacctctgctagaacagctacct
gatgcggataatgccggccttagcgtgcacatgctctgtgccaccagactgggtcagcat
gagagcaccatcaagaagctactggaccgctgccctcaagccatcatctcctacgccacc
cacgagttacatggcaacaaaatggctctgtggtggcagaaactgtttcctgagctttgt
gagaggacacggctttcttcaggagataacagtgttctaatcaccgccctcaaagagact
ctggcggtggtggccatggagctgaacccattagaatttttggacttgttaccagatgat
ggtactgcacacttcttcctacctcatcttctgaaatgcagccagaggcatctccttaca
tga
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