Ictalurus punctatus (channel catfish): 108271206
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Entry
108271206 CDS
T04658
Name
(RefSeq) probable ATP-dependent RNA helicase DDX49
KO
K14778
ATP-dependent RNA helicase DDX49/DBP8 [EC:
5.6.2.7
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ipu03009
]
108271206
Enzymes [BR:
ipu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108271206
Ribosome biogenesis [BR:
ipu03009
]
Eukaryotic type
90S particles
Helicases
108271206
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
AAA_22
Motif
Other DBs
NCBI-GeneID:
108271206
NCBI-ProteinID:
XP_017334090
Ensembl:
ENSIPUG00000005386
UniProt:
A0A2D0RVV4
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All DBs
Position
10:9261007..9266822
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AA seq
477 aa
AA seq
DB search
MAAFASLGLSEWLVDQCKQMGITRPTPVQENCMPAILEGRDCMGCAKTGSGKTAAFVLPV
LQKLSEDPYGIFCLVLTPTRELAYQIAEQFRALGKPLGLRDCIIVGGMDMVTQGLELSKK
PHVVVATPGRLADHIRSSDTFDMKRLRFLILDEADRLLEQGCTDFTKDLEVILSIVPAKR
QTLLFSATLTDTLQELKSIAMNKPFFWEHKSEVRTVEELDQRYILTPEKVKDAYLVNLIQ
KFQDEHDDWSIMVFTNTCKNCQILTMMLREFKFPTIALHSMMKQKQRFANLAKFKSNIFK
ILIATDVAARGLDIPTVQVVINHNTPGLPKNYIHRVGRTARAGRNGVSITLVTQYDIHLI
SAIEEQIQAKLKEYPVQEKEVLKILTQVNVTRRQCEIKLEATDFDEKKEINKRKQMILEG
KDPDLEEKRKNELAKIKREKTKFKGRIQEAIQKKKGKMLKKRATCKTAPSQTVPGPS
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgtttgcgtctcttggcctgtccgagtggctagttgatcagtgtaaacagatg
ggtatcacccgaccgaccccggtgcaagaaaattgcatgccagctattttggaaggtcga
gactgtatgggctgtgcaaaaactggaagcggaaaaacagcagcatttgtgcttccggtg
ctgcagaagttatctgaagatccctacggcatcttctgtttggtgttaacgcctacaagg
gaactggcttatcagatagctgaacagtttagagctttgggaaagcctctgggactgaga
gactgtatcattgttggaggaatggacatggtgactcagggtttggagctttccaaaaag
ccccacgttgttgtcgctacacctgggagattagcagatcacattcgaagttcggacacg
tttgatatgaagagactccgattcctgatcctggatgaggcagatcgtttgctggagcag
ggctgcacagatttcactaaggacctagaagttattctcagtattgtaccggcgaaacgg
caaacgctgcttttcagtgcgacgctgacagacacgctgcaggaactcaagagcattgct
atgaacaagcctttcttctgggagcacaaatccgaagtgcgaacagtggaagagctagac
cagcgatacatcttaacgcccgagaaagtcaaagatgcgtacctggtgaatcttatccaa
aaattccaagatgaacacgatgactggtctatcatggttttcaccaacacatgcaaaaat
tgccaaatactcacaatgatgcttcgggagttcaaatttcctaccatcgccttgcattcc
atgatgaaacagaaacaacgctttgcgaaccttgccaagttcaaatccaatatcttcaag
atcctcatagctacagatgtagctgccaggggcttggatatacctacagtgcaggttgtc
atcaatcataatacccccgggttgccaaaaaactacattcacagagtaggcagaactgca
cgtgcaggaagaaatggtgtttccattacactggtcacacagtacgacattcatttgatc
agtgctattgaggagcagatccaggccaagctgaaggagtatccagttcaagagaaagag
gtgctgaagattcttacccaagtcaacgtgacgagacgacagtgtgagattaaactggaa
gcaacagattttgatgagaaaaaggaaatcaacaaaaggaagcaaatgattcttgaaggg
aaagaccctgatttggaagagaagaggaagaatgagcttgccaaaataaaaagagaaaaa
acgaaattcaagggaagaattcaggaagccatccagaagaagaaaggaaagatgctgaaa
aaaagagcgacgtgtaaaacagctccaagccaaactgttccaggaccctcataa
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