KEGG   Ictalurus punctatus (channel catfish): 108271207
Entry
108271207         CDS       T04658                                 
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
ipu  Ictalurus punctatus (channel catfish)
Pathway
ipu03018  RNA degradation
ipu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ipu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108271207
  09123 Folding, sorting and degradation
   03018 RNA degradation
    108271207
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ipu03019]
    108271207
   03041 Spliceosome [BR:ipu03041]
    108271207
Messenger RNA biogenesis [BR:ipu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     108271207
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     108271207
Spliceosome [BR:ipu03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    108271207
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 108271207
NCBI-ProteinID: XP_017334092
Ensembl: ENSIPUG00000005368
UniProt: W5UFL1
LinkDB
Position
10:9266944..9272603
AA seq 142 aa
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVKEEVVSKGRGRGGMQQNKQQGKGRGGGAGRGVFGGRGRGMQ
GAGRGQPQDKKPGKPQGVKNQH
NT seq 429 nt   +upstreamnt  +downstreamnt
atgcttccactgtctttactgaaaacagcacagaaccaccctatgctggtggagctgaag
aacggggagacgtacaacggtcatctggtcagctgtgacaactggatgaacatcaattta
agagaagtcatctgcacctcccgggatggagataagttctggaggatgcccgaatgctac
atccgaggaagcacgatcaaatacctgcggatccccgacgaaatcatcgacatggtgaaa
gaggaggtggtgtccaagggccgtggccggggcggcatgcagcagaataaacagcaggga
aaaggcagaggaggaggagctggccgaggtgtgtttggtggccggggtagaggcatgcaa
ggtgctggccgtggacagccacaagacaaaaagcctggaaaaccacagggcgtcaaaaac
cagcactga

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