Ictalurus punctatus (channel catfish): 108271305
Help
Entry
108271305 CDS
T04658
Symbol
pkd1l2b
Name
(RefSeq) polycystic kidney disease protein 1-like 2 isoform X1
KO
K04988
polycystin 1L2
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ipu04040
]
108271305 (pkd1l2b)
04091 Lectins [BR:
ipu04091
]
108271305 (pkd1l2b)
Ion channels [BR:
ipu04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
108271305 (pkd1l2b)
Lectins [BR:
ipu04091
]
C-Type lectins
Others
108271305 (pkd1l2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Polycystin_dom
PKD_channel
PLAT
SUEL_Lectin
Ion_trans
Lectin_C
GPS
Motif
Other DBs
NCBI-GeneID:
108271305
NCBI-ProteinID:
XP_017334291
UniProt:
A0A2D0RVT3
LinkDB
All DBs
Position
10:27283516..27304155
Genome browser
AA seq
2039 aa
AA seq
DB search
MERPYPLSALLLVLILSVTTVCGINYRQTGSCPENRKAYNGSCYEFVTLQRSFYNAQAGC
ERGGGHLAFVHNEETQKFLLTHLQPGYNWWFGLASASFDLSSNSSEGEMVFITLDRNLLS
WLDGSEVTYSNFSGEDVPADGCGYISKESYFQWGVTSNCSQEFYFICEFESGQSLACVDN
HAMLKCDPDQVIEIDESFYGRNTTHYCRANHSPFNTSVQDRCSWADVVRVVSQSCNGLQV
CEVPANEPAFGEPCPELGSYLSIKYHCRDEPHSSTRHGTDSKASKFKRSTYNCTCHDLHD
KYNHDIKIKCISNCDKADRRLNMSLTTDKDDFVTPEWYLLQPDGPTPVTPCDKDYSDSRI
YLSNKLGSGTNFILSSAILKNHTSGITIVLKAFRDNKLGYGCYSAQLKPILIPIQINSTI
LPTPDCYIVPSEGNIYTLFTVLCTINSNYFCNEPCTYYLNTSKGVQLYNGDNEIMPNLLL
PVGQNELMVTITNKTGQTINTTLTVMVTNSSSNPSSALQSAVLLQQTGVLSTAKLAQAFE
TIFNNINSSSSDVQKELMASMCESLCEAVSPGNTAQLEEEIQIISTFILKLVTHQNLLTP
GTTSSAACVLDYISENQISLSESNGNVTRLSAALPIVLSASILLKLSASSDEQTSEILLK
AMDQVQSTMLVNKSLNTEPIILSSPLIKLYVNRLTPNNLDATQITAGNDSAAFSLPPSVS
SLVPPDEPVNLRMMSIVINPFAWNRDESISGTVGFLSLNTDNGSAIAVSDLSEEIEILLP
RQGASDKTFLNLASHSTTAINVTAPNSSLVVKLEPSDGTPLMLHLGFEYYPNDTRYVAKT
EFPQTNGPQEVNYTWVLNPNDVPLEVGLYYLLVRPIVPAGVNSTNMAVFITSFATNCKYW
NETDNTWYEDGCRVGPHTTPLVTQCLCTHLTAFGSSFFVMPNTVDVSRTAELFSSFANNP
VVVCFVGAIFLAYIIAVIWAHKKDLQDKIKVRITVLEDNDPLAEYRYLVAVSTGYRHGAA
TTSHVTLTLTGTVWESKPHHLTDPEKPVFTRGGVDIFMLTTPFSLGELQSIRLWHDNSGE
HPDWYVNKVLVQDLETGQVWHFLCNSWLAIDIGDCTLDKVFPIASENELKGFHNLFFTKT
AKDLCDGHIWYSVLNRPASSNFTRVQRLSCCLSLLLCTMLTSIMFWGIPQNPSEQDMELG
TIKFNVQQFMIGIQSSIIMFPVNLLIVSIFRSTRPRKKKEVAIIQDSKSGSPKQEKKLAE
RWRIQTDISIEIIVKEIKKIVRALAKAVKCPVPNAAEESETTDISTVLFVLEDIIQKQTF
THSRFYVEDPENNHFLVYKNYRRYLYKQLRNLEKQLRLLGPSQFPNREGYTQALLKVRNM
KLLLEPYLYSDPIDNEVHRTGPDGEEKKKCYQKGLPWWFMIVGWILVVATSGVSAYFTMM
YGLTYGKERSISWLISISVSFFESLFVTQPVKVLGLAIFFALVVKNVESQDENYFCLLKD
MTLTYSEDPDDIRISRRDSTSRFYKPPPLADIEKMKENYIKNQKAIALIKEIIVYIAFLC
VLLLATYGQRDPNAFYLSRHIQQRFSNGITDSMTPRDVFTWANQVLISNLYGRRPGFITD
GNSKLVGSARLRQVRVHKESCRISKVMQRAVRDCHAPYSWGIEDMGSYGPGWNRSRDGNL
TKNLQMPWQYQTQSKLRGHPIWGSMAFYRGGGFVLDLGLDPQQASSMLQYLFDNTWLDVF
TRAIFVEFTVYNANVNLFGIVTLMLETNAVGAYQYSKDLQILRLYQTTDGINIVAAEVIY
FLFILYYMFLQIKRIKQQKLQYFRSKHNLLELSIILLSLAAVGAIINRTIKGNQDLKYFQ
ENKDQFPSFYDTAAADSTLGYIMAFLILLGTIKMWHLLRLNSKLNLITCTMKRAWNDISS
FLVVLIIMVLAYSIVSNLLFGWILYTYKTLQDSMLAIIALQLGIFNYEEVLDLNPVVGGF
LILSCVIFLTFVVLNLFIAVILEAFSHEQKHYKPSDEEEIVDLMMGKICNAFGIRVKKK
NT seq
6120 nt
NT seq
+upstream
nt +downstream
nt
atggagagaccgtaccctctgtctgctttactacttgtgttaatcctcagtgtcaccacg
gtctgtggtataaactacagacagaccgggtcctgcccagagaaccggaaggcctataat
ggatcttgttatgagtttgtgacccttcagcggagcttctataacgctcaggctggatgt
gagcgcggcggtggacatctggccttcgtccacaatgaagaaacacagaagtttctcctg
acgcatctgcagccgggatacaactggtggttcgggttagcgtccgcgtccttcgacctg
agctcgaactcttctgagggtgagatggtgttcatcacgctggatagaaacctgttgtcc
tggctggatggatctgaagtgacgtactcgaacttttctggggaggacgtgcctgccgac
ggctgtggctacatctccaaagaatcatattttcaatggggagtaaccagtaactgcagc
caggagttctactttatctgcgagtttgagtctggacagagtctagcctgcgttgacaac
cacgccatgctgaagtgtgaccctgatcaggtcatagagatcgacgagagcttctacggc
aggaacacaacgcactactgcagagccaaccattctccctttaacacatctgtacaggac
aggtgcagctgggcggatgtggtccgtgtggtatcacaatcctgcaatggtcttcaagtg
tgcgaggttccggcaaatgaaccagcctttggagaaccttgtccagaactgggaagttac
ctgtctataaaatatcactgcagagatgaaccacattcatcaacacgacatggaaccgac
tctaaggcttcaaagtttaaaaggagcacctataattgcacatgccacgacctacatgac
aagtataaccatgatattaaaatcaagtgtataagcaactgtgataaagctgatcgccgt
ttaaatatgtctctaacgacagataaagacgattttgtaactcctgagtggtatctccta
cagccagacggtccaacacctgtgactccatgcgataaagattattccgatagtcggata
tatctgagtaataagcttggaagtggtactaattttattctttcaagtgccatattgaaa
aaccataccagtggcatcactattgtattaaaagccttcagagataacaagcttggttat
ggttgctacagtgctcaactcaaacctatactcattcctatccaaatcaactcaacaatt
ttacctacgcccgactgttacattgtccctagcgaggggaatatctacactttattcaca
gtcctctgcaccataaactcgaattatttctgtaatgagccttgcacatactacctgaac
acctctaaaggtgttcagttgtataatggcgataatgagatcatgccaaacctgttgctt
cctgtgggtcaaaatgagctgatggtcactattacgaataaaactggtcagacaatcaac
actacactcaccgttatggtcacaaacagcagcagtaacccttcctcggctctacagagt
gctgtgcttctgcagcaaacaggggtgctttcaaccgccaagctggcgcaggcgtttgag
actattttcaataatataaacagcagcagcagtgatgttcaaaaagagcttatggcgagc
atgtgtgaatcgttgtgcgaagcagtgtccccgggaaatacagcccagcttgaagaagag
atacagatcatttctacctttatcctaaaacttgtcacgcatcaaaatctgctaacgcct
ggaactacgtcgtcagcagcctgtgttcttgactacattagtgagaaccaaatctcgttg
tcagagagtaatggaaatgttacacgattgagcgcagctttgccgattgttttatcagcc
agtattctcctcaagctttctgctagcagtgacgaacagacctctgaaatattactcaag
gcaatggaccaagtacagagcaccatgctcgttaataaatcgttaaacacggagccaata
atactcagttctccactgattaagctgtatgtgaacaggctgacaccaaataaccttgac
gcaacccagatcaccgctgggaacgattcagctgccttctcccttccaccttcggtttct
agtctggttcctccagatgagccagtgaatttacgtatgatgagcattgtgataaaccct
ttcgcttggaacagagatgagtctattagcggaacggtcgggtttctctctcttaacacg
gataatggctccgccattgcagtcagcgatctcagtgaggaaatcgagattctcttacca
agacaaggtgcttcagacaaaacatttctgaacctggcaagccacagcactacagccatt
aatgtgaccgctccaaacagctctctggtggtgaaactagagccctcagatgggacacct
ttgatgttacatctgggttttgaatattatccaaatgacaccagatatgtggccaagacc
gaattccctcaaacaaacggcccacaagaagtcaactatacgtgggtgctgaacccaaat
gatgtgccactagaagtgggactttactatcttctagtgaggcctattgtaccagcaggt
gtgaattctacaaatatggcagtgttcatcacatcatttgccactaactgcaaatactgg
aatgagacggacaacacctggtatgaggacggctgtagggttggcccacacaccacacca
ctggtcactcagtgcctgtgcactcacctgacagcgttcgggagctcattctttgtcatg
cccaacacggtcgacgtgtctcgcaccgctgagctcttttcctcgttcgccaacaacccc
gtggtagtgtgttttgttggcgccatattcctggcctacattatagcagtgatatgggca
cacaagaaagaccttcaggacaaaataaaggtgagaatcacagtgctggaggataatgac
ccattggctgaatatcgttacttagtagctgtctccacggggtatcgccatggagctgcc
accacgtctcacgttacgctgacgctaacaggcactgtttgggagagtaagcctcatcat
ctgactgacccagaaaaacctgtgtttactaggggaggggtagacatatttatgctcacc
actcctttttcacttggagaacttcagagcatcaggctgtggcatgacaactctggcgag
catcctgattggtacgtcaataaggtgctggtgcaggatctggagactggacaggtgtgg
cacttcctgtgcaactcatggctggccattgatataggcgactgcactctggacaaggtg
ttccctatagcatccgagaatgagctaaaaggtttccacaatctctttttcacgaagaca
gcgaaagacctgtgtgacggccacatctggtactctgtcctaaatcgacccgccagcagt
aacttcactcgagtccagcgcctctcttgctgtttatccttgctgctctgcaccatgcta
accagcatcatgttctgggggattccccaaaacccctctgaacaagacatggaattaggc
actatcaagttcaacgtgcaacagtttatgatcggcatccagagttccattattatgttc
cctgtcaacctcttgatcgtgtccatattcagaagcactcggcctcggaaaaagaaggag
gtagcgataattcaggattccaaatctggatctccaaagcaggagaaaaagcttgctgag
agatggcgcattcagacagacatttccattgagatcattgtcaaagaaataaagaaaata
gttcgcgccctggcgaaggcagtgaagtgtccagttccaaacgcagcagaggaatctgaa
acaacagacatcagcacggtattgtttgtcctggaagatatcatccagaagcagactttc
acacattccaggttttatgtagaagatcccgaaaacaatcacttcttagtatacaagaac
tatcggcgctatctctacaaacagctccggaatttggaaaaacagctgcggttgctgggt
ccttcacaattccctaatcgagagggttacactcaggctctgcttaaggttcggaatatg
aaactgctgctggagccgtatctctactccgaccctatagacaacgaggtccacagaacc
ggccctgacggagaggaaaagaaaaagtgctatcagaaaggcttaccctggtggtttatg
atcgtgggttggattctcgtcgtggccactagtggcgtgtcggcgtacttcaccatgatg
tatgggctgacgtacggaaaggagcgctccatcagctggctcatttcgatctcggtgtcc
ttctttgagagtttgttcgtcacacagcctgtaaaagtgcttggattggcaatcttcttt
gctctagtggtgaaaaatgttgaaagtcaggatgagaattatttttgcctgttgaaggac
atgacacttacctactcagaggatcccgatgatatacgcatttccagaagggacagcacg
agcaggttctacaagccgcctcctcttgctgacattgagaaaatgaaggaaaactatatc
aaaaatcagaaagccattgccttaatcaaggagataatcgtctacatagcgtttttgtgc
gtactactcttggcgacgtatggtcagcgcgatccaaatgccttttatctcagtcggcac
attcagcaacgtttcagcaacggtatcactgacagcatgacccccagagatgtgtttacc
tgggcaaatcaagtgctcatcagcaacctctacggacggcgtccaggcttcatcacagat
ggaaactcgaagcttgtgggaagtgctcgtctcaggcaggttcgagtgcacaaggaatcg
tgtagaatttctaaagtcatgcaacgtgctgttcgtgattgtcatgcgccatactcttgg
ggtatagaggatatgggctcctatggtccaggatggaatcgttcaagagatggaaatttg
actaagaacctccaaatgccctggcaataccaaacccagtccaaactcagggggcaccct
atctggggctccatggctttctacagaggtggaggatttgtactggacctgggtcttgac
ccacaacaagcaagcagcatgctacagtacctgtttgacaacacgtggttggacgtattc
acaagggcgatctttgtcgagttcacggtatacaacgcaaacgtcaacctcttcggtatt
gtgaccctgatgctagaaaccaacgcagtgggagcgtaccagtacagcaaagacttgcag
atcttacgtctttatcagaccacggatggcattaatatagtggccgctgaggtcatttat
ttccttttcattctctattatatgttcttgcagatcaagaggatcaagcagcagaaatta
cagtacttcaggagcaagcataaccttttagaactgtccatcattcttctaagcttggct
gcagtgggcgcaatcatcaataggacgattaaaggaaaccaagatctgaagtatttccag
gagaacaaagaccaatttccaagcttctacgacacggccgcagcagactcgaccctgggg
tacattatggctttcctgattctgctgggcaccatcaaaatgtggcacctgttacgcctg
aactccaagctgaacttgattacctgcacgatgaagcgagcgtggaatgacatctccagc
ttcctcgtggtcctaatcatcatggtcctagcctactccattgtgagtaatttgctgttt
ggttggattctctacacgtacaagactcttcaagattccatgttagcgatcatcgcctta
cagcttggtatattcaattatgaagaggtcctggatttgaacccggtggtcggtggcttc
ctaattctctcttgcgtcatcttcttgacgttcgtggtgctgaaccttttcatcgcagtc
atccttgaggcgttcagtcacgagcaaaagcactacaagccgtctgacgaggaggaaata
gtagacctgatgatgggaaagatctgcaacgcgttcggcatcagagtgaagaagaaatga
DBGET
integrated database retrieval system
