Ictalurus punctatus (channel catfish): 108271343
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Entry
108271343 CDS
T04658
Symbol
caprin1a
Name
(RefSeq) caprin-1a isoform X1
KO
K18743
caprin-1
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108271343 (caprin1a)
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
108271343 (caprin1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Caprin-1_C
Caprin-1_dimer
Motif
Other DBs
NCBI-GeneID:
108271343
NCBI-ProteinID:
XP_017334383
Ensembl:
ENSIPUG00000004594
UniProt:
A0A2D0RV56
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All DBs
Position
10:complement(29594280..29605942)
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AA seq
734 aa
AA seq
DB search
MPSATTGDYAVQSSSPELGSAPVSAPTEALKQVLNIIEKKVRNMEKRKSKLEDYKTRKSK
GERLNQDQLDALSKAQEVAHNLEFARELLKSFSSLNVEIQKAVKKTARREQLKRDEAEQR
RLKAVLEVQYVLDQLGEESVRQELRQVERGTDGPLLTEAELTGLDDFYKLVGPERDPNIR
LTDQFEEASVHLWELLEGRDKAVAGTTYKALKETLDKVLLSGYFDQTQTSHQNGVCEEEE
EEQQQQQQQQPPPPQQQQPAPAPAESAECEEQPAEPEGSVTQEFTEPIEVEATEFVNRKF
IPEATYNTSPEKEQGGEWAVSPEIVSSLQQQQPPQPQQPPSSMSPALVSSEAHSLAPVLS
PASADPLVRKQAVQDLMAQMQGTYNFMQDSMLEFDGQSLDPAIVSAQPMKSAQMVCAPGK
DGNLLHNAAGTTESCFSAHTETRLPQHSTVPVHPEPTQVPMVTPPTEAYASTPPLYQPPH
STDPRPQPDPIDPLQVSMPLSSEQPPAPSSQPQAFQSVSKPLHSGINVNAAPFQSMQAVF
NLNAPVPPSNELESQKMSSQYQSTYTQSFSSQPTHSVEQQELQQEPLQSVVGAFHSQDQG
IPSSGGHQSMSQQPSGQGAGFGRQPQSFYGSRAMPRGGPRNARGAMNGYRGPSNGFRGGY
DGYRAPFPNTPNTGYGQTQFSTPRDYSSSTYQREGYQQSFKRGAAQGARGSSRGRGGLYK
PGRGMSAMAAVQTS
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgccatctgcaaccactggtgactatgctgttcagtcctccagtccagagctgggctct
gctcctgtctcggctcctaccgaggccctgaagcaagtgctgaacatcatcgagaagaag
gtccgcaacatggagaagagaaagtccaagctggaagactacaagacacggaagagcaaa
ggagagcggctaaatcaggatcagctggacgctttgtccaaagctcaggaggtggcacac
aacttggagtttgcccgggagcttctgaagagcttctcgtctttaaacgtcgagatccag
aaggcggtgaagaagacggcgcggcgggagcagctgaagcgcgatgaggctgagcagcgg
cgcctgaaggctgtgctggaggttcagtacgttctggaccagctcggcgaggagagcgtg
aggcaggagctgaggcaggtggaacgggggaccgacgggcctctgctcaccgaagccgag
cttacgggactcgacgacttctacaagctggtcggccctgagagggaccccaacatcagg
ctgactgatcagttcgaggaggcgtccgtgcatttgtgggagttgctggaaggaagagac
aaagctgtggcaggaaccacgtacaaggcccttaaggagactttggacaaggtactgctc
agcggttacttcgaccagacgcaaacttcacaccagaacggtgtgtgtgaggaagaggag
gaggagcagcagcagcagcagcagcagcagccgccgccgccgcagcagcagcaacctgct
cccgcccctgccgagtcagcggagtgtgaggagcagccggcggagccagaaggttcggtc
actcaagaattcacggagcccattgaagtggaagcaacagagtttgtaaaccgaaagttc
attccagaagccacttataacaccagtcctgaaaaagagcaaggaggggaatgggccgta
agccccgagatcgtaagctccctccagcagcagcagcctcctcagcctcagcagcctcct
tcctcgatgagcccggctctggtgagctcggaggcccactcgctcgcccccgtcctctct
cccgcctcggctgacccgctggtcaggaagcaggccgtgcaggacctcatggcacagatg
cagggcacctacaacttcatgcaggactccatgctggagtttgacggacagtctctggat
cccgccatcgtatccgctcagcctatgaagtctgcacagatggtctgcgctccaggtaaa
gatggaaacttgctccacaacgcagctggtacaacggagtcgtgtttttcagctcacaca
gaaacccgactccctcaacacagtacagttcctgtacatccagaacccacacaagttccg
atggtgacccctcccaccgaagcgtacgcctctacgccgccgctctaccagcctcctcac
agcacagaccctcggcctcagcccgaccccatcgaccctctccaggtgtccatgcccctg
tcgtcggagcagccccccgccccgtcgtctcaaccccaggcctttcagtccgtctcgaaa
cccctgcacagtggcatcaacgtcaacgccgcaccattccagtccatgcaagcggtgttc
aatctgaacgccccagttcctccctcgaatgagctggagtctcagaagatgtcgagtcag
tatcagagcacttacacccagagcttcagcagccagcctacacactcggtggagcagcag
gagcttcagcaggaacctctccagtcagttgtcggagcgttccactctcaagaccaaggg
attccttcctctgggggccaccagtcgatgagccagcagccgtcgggtcagggcgcgggg
ttcgggcgccagcctcagtctttctacggcagccgagccatgccacgtggaggtccccgg
aacgccagaggggccatgaacggataccgcggaccatccaacggcttcagaggtggatat
gacggctatcgcgctccttttcccaacactcccaacactggttatggacaaacccagttc
agcactccacgggactactcgagcagcacctaccagcgggaaggatatcagcagagcttc
aagagaggagctgcccagggagctcgaggtagctctcgaggacggggcggactgtacaaa
cccggccgagggatgagcgccatggctgctgtccagactagctga
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