Ictalurus punctatus (channel catfish): 108271352
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Entry
108271352 CDS
T04658
Name
(RefSeq) exosome complex component MTR3
KO
K12587
exosome complex component MTR3
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108271352
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108271352
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
108271352
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
108271352
NCBI-ProteinID:
XP_017334407
Ensembl:
ENSIPUG00000004761
UniProt:
A0A2D0RV79
LinkDB
All DBs
Position
10:29033021..29033988
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AA seq
270 aa
AA seq
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MPVDTKRIRGPELSQSPLLFVSPVSEVSSSSSSSRQGVRGNGDVRPVFARCGLVSQAKGS
AYLEAGNTKIICSVYGPRETERKDETDMKSGRLVCDFRLAPFSCPKRGAWIQGAEERDLS
AALAESLQPGACLHRYPRAQVDVNVVVLENDGSVLAHAVTCASMALADAGIEMYDMVLGC
ALRQDGERCLVDPDLAEEQSGAGENQGRVAVALLPNLNQISGLQADGEMREDTLTAAVRT
CVEGCHKLYPVVQQAILRAVKKKAPPPPEK
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgccggtagatactaaacgtatccgtggaccggagttatcacaatctcctttattattt
gtttctccggtttctgaagtcagcagcagcagcagcagcagcaggcagggcgtgcgagga
aacggtgatgttcgcccggtattcgcgcgctgcggactcgtgagccaggccaagggttct
gcgtacctcgaggccggcaacacgaagatcatctgctcggtgtacggtccgcgcgaaacg
gagcgcaaggacgagaccgacatgaaaagcgggcgcctcgtatgcgacttccgcctggcg
ccgttctcctgcccgaagcgcggtgcgtggatccagggcgccgaggagcgcgacctgtcc
gcggcgctggccgagagcctgcaacccggcgcgtgcctgcaccgctacccgcgcgcccag
gtcgacgtgaacgtcgtggtgctggagaacgacggctccgtcctggcgcacgcggtcacg
tgcgcgtccatggcgctcgcggacgccggcatcgagatgtacgacatggtgctgggctgc
gcactgaggcaggacggagagcggtgcctcgtggaccccgacctggcggaggagcagagc
ggcgcgggggagaaccagggccgcgtcgcggtggcgcttctccccaacctgaaccagatt
tccgggctgcaggcggacggcgagatgcgcgaggacacgttaacggcggccgtcaggacg
tgcgtggagggctgccacaagctgtacccggtggtgcaacaagccatactgcgggcagtt
aaaaagaaagcaccacctccacctgagaaataa
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