KEGG   Ictalurus punctatus (channel catfish): 108271352
Entry
108271352         CDS       T04658                                 
Name
(RefSeq) exosome complex component MTR3
  KO
K12587  exosome complex component MTR3
Organism
ipu  Ictalurus punctatus (channel catfish)
Pathway
ipu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ipu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    108271352
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ipu03019]
    108271352
Messenger RNA biogenesis [BR:ipu03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     108271352
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-GeneID: 108271352
NCBI-ProteinID: XP_017334407
Ensembl: ENSIPUG00000004761
UniProt: A0A2D0RV79
LinkDB
Position
10:29033021..29033988
AA seq 270 aa
MPVDTKRIRGPELSQSPLLFVSPVSEVSSSSSSSRQGVRGNGDVRPVFARCGLVSQAKGS
AYLEAGNTKIICSVYGPRETERKDETDMKSGRLVCDFRLAPFSCPKRGAWIQGAEERDLS
AALAESLQPGACLHRYPRAQVDVNVVVLENDGSVLAHAVTCASMALADAGIEMYDMVLGC
ALRQDGERCLVDPDLAEEQSGAGENQGRVAVALLPNLNQISGLQADGEMREDTLTAAVRT
CVEGCHKLYPVVQQAILRAVKKKAPPPPEK
NT seq 813 nt   +upstreamnt  +downstreamnt
atgccggtagatactaaacgtatccgtggaccggagttatcacaatctcctttattattt
gtttctccggtttctgaagtcagcagcagcagcagcagcagcaggcagggcgtgcgagga
aacggtgatgttcgcccggtattcgcgcgctgcggactcgtgagccaggccaagggttct
gcgtacctcgaggccggcaacacgaagatcatctgctcggtgtacggtccgcgcgaaacg
gagcgcaaggacgagaccgacatgaaaagcgggcgcctcgtatgcgacttccgcctggcg
ccgttctcctgcccgaagcgcggtgcgtggatccagggcgccgaggagcgcgacctgtcc
gcggcgctggccgagagcctgcaacccggcgcgtgcctgcaccgctacccgcgcgcccag
gtcgacgtgaacgtcgtggtgctggagaacgacggctccgtcctggcgcacgcggtcacg
tgcgcgtccatggcgctcgcggacgccggcatcgagatgtacgacatggtgctgggctgc
gcactgaggcaggacggagagcggtgcctcgtggaccccgacctggcggaggagcagagc
ggcgcgggggagaaccagggccgcgtcgcggtggcgcttctccccaacctgaaccagatt
tccgggctgcaggcggacggcgagatgcgcgaggacacgttaacggcggccgtcaggacg
tgcgtggagggctgccacaagctgtacccggtggtgcaacaagccatactgcgggcagtt
aaaaagaaagcaccacctccacctgagaaataa

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