Ictalurus punctatus (channel catfish): 108271382
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Entry
108271382 CDS
T04658
Name
(RefSeq) protocadherin-20
KO
K16498
protocadherin delta 1
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
108271382
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ipu01009
]
108271382
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ipu04515
]
108271382
Protein phosphatases and associated proteins [BR:
ipu01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
108271382
Cell adhesion molecules [BR:
ipu04515
]
Cadherins
Protocadherins
108271382
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
CD34_antigen
Adeno_E3_CR2
TM_ErbB1
Motif
Other DBs
NCBI-GeneID:
108271382
NCBI-ProteinID:
XP_017334446
Ensembl:
ENSIPUG00000012442
UniProt:
A0A2D0RW83
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Position
10:25966573..25971306
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AA seq
885 aa
AA seq
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MCNVRKGSCFVRKGKFWGFWILLLYTSPLSCFSKFSHLVYKIKEGLPKGILIGSIGEDLK
LDFSVDPPRLFHLELRQSGSQYVNLSDTAGELYTSALEIDREALCADSHEGQGCTISLDV
IILPQQYFQLVKIKIVIEDVNDNTPHFPVDEIRVSVPENAPVNARFVVEQSAVDPDIGIY
GVQTYWLANDFGVFTLDVEQNEGGELTPFLIVTGPLDRETKAEYLTELIAEDGGSPPFLG
TATLRIIIADVNDNCPKFIETQVNVTLSENTTKGSQLARLYAFDPDQGTNAQIAYAFSKR
VTRETRNLFHLDEITGVIKLAEKIDSDTGKLYKLVVLANGPACIPDIATVTVKVVKQVSG
PPAVIPRYIASEKDGVVSLSESEPPFTPIAFFTIKNVDPKKKVTCFLQGFGPFRILPYKN
VKNEYLLETTDQLDYEKQKYYELTVVVRNTDGVGVEKQVKVQMLDDNDNAPIFKQSVIDI
KIEENNAPDTFLTKLQATDEDSGNRGEVLYLLGSDVPPIFHLERLTGVLTVTTSLDREEK
ETYRFIVRAVDCGTPRKESIATVSITVLDRNDNSPRFINKDFTFFIPENFPGFGEIGVLS
VTDADAGENGWVALSIINGSDIFVIDTGRGALRAKTPLDREQQGTYYLWVEAVDGGKPAL
SSVTMVTVLLLDVNDNPPVVLFPQSNQSYLLVLPSTLPGTSITEVYAVDRDTGMNAVIAY
SIIKRRGGEPGSFDIDPDTGNITLRKVLSDRGLYSLLVKVSDHGQPEPLHSTVLVNLFVN
ETISNETYIQSLLTREADIGIEEVRPPNRLAQGPEYSELFPCKLLLIALSTTCLGLLLIV
VSLTAYICCKRQKHHKKKRLEVEIPLKMNSDRQVMDRKLMEISNI
NT seq
2658 nt
NT seq
+upstream
nt +downstream
nt
atgtgcaacgtacgcaaaggttcctgctttgttaggaaaggaaagttctggggtttttgg
attctcctgctgtacacaagtcctctttcctgcttttcaaagttcagccatcttgtttat
aaaataaaggaaggcttacccaaggggattctcatcgggtctattggagaagatttaaag
ttggatttctctgtcgacccccctcggctgttccatctggagttaaggcagagtggctct
cagtatgttaatctaagtgatacagccggggagctatacacgtctgctttggagattgac
cgagaggctctatgcgcagattcccatgagggtcaaggatgcactatctctctggatgtg
atcattctgccacagcagtacttccagctagttaagatcaaaatcgtcattgaagatgtt
aatgacaacacgccacatttcccagtggacgagatcagggtgtctgtgccggaaaatgca
ccagtcaatgctcggtttgtggtagagcaatctgctgtagacccagatataggaatttat
ggggttcagacttactggctggctaacgactttggagttttcacactggacgttgagcaa
aatgaagggggagagttgacgcctttcctgatcgttactgggccgctggacagggaaacg
aaagcggaatatttaactgaattaatcgctgaggatggaggctccccgccatttttgggc
actgccactcttagaattatcatcgcagatgtaaacgacaattgccccaaattcatcgag
actcaggtgaatgtgacactttctgaaaacaccacaaagggctcacagttggcccgtctc
tatgcctttgacccagatcagggtaccaatgctcaaattgcttacgctttcagtaaaagg
gtcacccgagaaactaggaacctgtttcatttggatgaaatcacaggggtcatcaagcta
gctgaaaagattgattctgacactggaaagttgtacaagctggttgtgctggctaatggg
ccagcttgcataccagatattgctactgtcactgtgaaggttgttaaacaggtttcggga
ccaccagctgtcataccccgttacattgcttcagagaaagatggtgtggtttctctgagt
gaatcagagccaccctttacaccaattgctttcttcaccataaagaatgtagacccaaag
aagaaggtgacgtgctttttgcaagggtttggacccttcaggattttgccatataaaaat
gtgaaaaatgagtacttgctggagactactgatcagttggattatgaaaaacagaaatat
tatgaactcactgtggtggtcagaaacacagatggtgtaggtgttgagaaacaggtgaaa
gtgcaaatgttggatgataatgacaacgcgcccatatttaagcagtcagttattgacatc
aaaattgaggagaacaacgctcctgacacatttctcactaaactccaggccactgatgag
gacagcggtaacaggggtgaggtactctatcttcttgggtcagatgttcccccaatcttc
caccttgaacggttgactggggtcttgaccgtgaccacatctcttgacagagaggagaaa
gagacctaccgttttatagtccgagcagttgactgtggcacaccaaggaaggagtcaatt
gccacagtttcaatcaccgtgctggatcgcaacgacaatagtcctcgtttcatcaacaaa
gatttcaccttcttcatcccagagaacttcccaggatttggggagattggcgtgctgtcc
gtcacagatgcagatgctggggaaaatggctgggtggcactgtcaatcatcaatggaagt
gacatatttgtcatcgacacaggacgtggggctttgagagcgaagaccccactggacagg
gagcaacaaggaacatactatctctgggttgaagctgtggatggaggtaagcctgcactc
tcctctgtcaccatggttactgttttgctcctggacgtcaacgacaacccaccagtggtg
ctgtttccccaatcaaaccagtcttacttgctggttcttcccagtacactcccaggaaca
tccattacagaggtctacgccgtggaccgggacactggcatgaacgctgtcattgcgtac
agcatcatcaagcgtaggggtggtgaaccaggctcatttgacatagacccagatacggga
aacatcaccctcaggaaagtcttgagtgaccgcggcctgtacagcctgctggtcaaagtc
agtgaccatggccaacctgaaccactccactccactgttttggtcaacttgttcgtcaat
gagaccatcagcaacgagacatacattcagagcctcctgaccagagaggcagatatcggg
attgaggaggtcagaccaccaaataggcttgcccaggggccagagtatagcgaactcttc
ccctgcaagctattacttattgcccttagcaccacctgtctggggcttctccttatagtg
gtgtcactgactgcatacatatgctgtaagaggcaaaaacatcataaaaagaagagattg
gaagtagagatccctttaaaaatgaacagtgacaggcaagtcatggacagaaagctcatg
gaaatttctaacatatga
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