Ictalurus punctatus (channel catfish): 108271395
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Entry
108271395 CDS
T04658
Name
(RefSeq) transcription factor Sox-2
KO
K16796
transcription factor SOX2 (SOX group B)
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ipu03000
]
108271395
Transcription factors [BR:
ipu03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
108271395
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
108271395
NCBI-ProteinID:
XP_017334470
UniProt:
W5UF16
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All DBs
Position
10:17878326..17880599
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AA seq
332 aa
AA seq
DB search
MYNMMETELKPNPGGNNTGTGNTGGGTPGQKNSPERVKRPMNAFMVWSRGQRRKMAQENP
KMHNSEISKRLGAEWKLLSESEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLMKKDK
YALPGGLLAPGGGGGGNLGGNGMSAGVGSGLGGLGVNLGVNQRMDAYAHMNGCWSNGGYG
MMQEQLGYAAAASPMQQQQQQHHVHRYDMSALQPYGSMTSAQTYMNGSPTYSMSSYPQLS
SMGSAVKSEASSSPPAVTSASHVRAAAAPAPAHAPPPPSCQTGDLRDMISMYLPGAEVAE
QTGQSRLHLSQHYQSAPVHATTINGTIPLSHM
NT seq
999 nt
NT seq
+upstream
nt +downstream
nt
atgtacaacatgatggagaccgagttgaaacccaatcccgggggtaataacaccggcacc
gggaacaccggaggcggcacaccggggcagaagaacagtccggagcgcgtaaagaggccc
atgaacgcgttcatggtgtggtcccgcggtcaacggcggaaaatggcgcaagagaacccg
aagatgcacaactcggagatcagtaagaggctgggcgctgagtggaagctgctgtccgag
tctgagaagcggccgttcatcgacgaggccaagcggctgcgcgcactgcacatgaaggag
cacccggactacaagtaccgaccgcggcggaagaccaagactctcatgaagaaggacaag
tacgcgctgcccggcgggctcctggcaccgggcggcggtggcggcggaaacctaggtggt
aacggcatgagcgccggcgtgggctcgggcctcggcggcctcggcgtcaacctcggggtc
aatcagaggatggacgcgtacgcgcatatgaacggctgctggagcaacggaggctacggc
atgatgcaggagcaactgggctacgcggcggcggcgagtcccatgcagcagcagcagcag
cagcaccacgtccaccgctatgacatgagcgcgctgcagccgtacggctccatgacgagc
gcgcagacctacatgaacggctcacccacatacagcatgtcgtcttacccgcagctcagc
tccatgggctcagctgtgaaatccgaggccagctcgagtccacccgctgtcacgtccgcg
tcgcacgtcagagccgccgcagcgcccgcacctgcacacgcaccgccgccgccctcgtgc
caaaccggggacctgcgggacatgatcagcatgtatctgcccggggcggaagtggccgaa
cagacgggccagagcagactgcacctgtcgcagcactaccagagtgcacctgtgcacgca
actacgattaacggcaccatcccgttatcgcacatgtaa
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