Ictalurus punctatus (channel catfish): 108271495
Help
Entry
108271495 CDS
T04658
Name
(RefSeq) transcription factor Sox-14
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ipu03000
]
108271495
Transcription factors [BR:
ipu03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
108271495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
SOXp
Motif
Other DBs
NCBI-GeneID:
108271495
NCBI-ProteinID:
XP_017334596
Ensembl:
ENSIPUG00000013062
UniProt:
A0A2D0RWN4
LinkDB
All DBs
Position
11:15185164..15189056
Genome browser
AA seq
244 aa
AA seq
DB search
MSKPADHIKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSESEKRPYIDE
AKRLRAQHMKEHPDYKYRPRRKPKNLLKKDRYVFPLPYLGDAEHLKALPVSGADSLLVSG
PDKARAFLPPAASAPYSFLDPTQFGSSAAQKMADMPHALAAAAAGSLPYASSLGYQNGAF
GGLACPGQHTHTHPSPTNPGYVVPCNCTAWSAASSLQPPVAYILFPGMGKSGIDPYPTAH
ATAM
NT seq
735 nt
NT seq
+upstream
nt +downstream
nt
atgtccaagccggctgatcacatcaagagacccatgaacgccttcatggtatggtcccgc
ggccagaggaggaaaatggcccaagagaatcccaagatgcacaactctgagatcagcaag
aggctcggtgccgagtggaagcttctctccgagtctgagaagcggccctacattgacgag
gccaagaggctgcgcgcgcagcacatgaaagagcacccggactacaagtaccggccgcgg
cgcaagcccaagaacctgctcaagaaggacagatacgtgttcccgctgccctacttgggc
gacgctgaacacttgaaagcacttccggtttccggtgccgactcgttactggtttccggg
ccggataaagcgcgcgcgttcttgccgccggcggcctctgcgccctattcgtttcttgac
ccaactcagttcggctccagcgctgcgcagaagatggccgatatgccacacgccctagcc
gctgccgctgccggatcgctgccctacgcctcctcactcggctaccagaacggggcgttt
ggcggcctggcgtgtccggggcagcacacacacacccacccgtcacccaccaacccaggc
tatgtagtgccttgcaactgcacagcgtggtcggcggcttccagcctgcagccgcccgtc
gcctacatcctattcccgggcatgggtaagagcggcatcgacccgtatccgacggcgcac
gccacggccatgtaa
DBGET
integrated database retrieval system
