Ictalurus punctatus (channel catfish): 108271601
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Entry
108271601 CDS
T04658
Symbol
col15a1a
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K08135
collagen type XV alpha
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ipu00535
]
108271601 (col15a1a)
Proteoglycans [BR:
ipu00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
108271601 (col15a1a)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
108271601
NCBI-ProteinID:
XP_017334766
Ensembl:
ENSIPUG00000024896
UniProt:
A0A2D0RX60
LinkDB
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Position
1:28502473..28593709
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AA seq
1308 aa
AA seq
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MTRGDMPFLRLPPWCCLFLAALWLFHPATAFQLQDERGSSNQLDLTELIGVPLPPSVSFI
TGFEGFPAYSFGPDANVGRLTRSFIPDPFFRDFAIIVTAKPTTRHGGVLFAITDALQKIV
HLGVALAPVEDGSQRVVLYYTEPGTTSTQEAASFKMADLTGRWARFTLAVQGHEVKLYMD
CEEHHRVSFHRSQKSLTFEPSSGIFVGNAGGTRLERFVGSIQQLVLTPDPRAPDEQCEED
DPYTSGYGSGSDEYDDTETTDEVKKVHEEREYPVPDEDQTLPVRAPPTEASSKVPFDDED
LEEESSGQDVVLTEREPNRTEKAVYNKGDDYPLMMPVHKGEKGDRGPAGPPGPPGPPGTA
SSSGPKGDISSWVGEPGAQGPPGPTGAPGKDGLPGSRGEDGKPGGTGAPGFPGIPGDPGI
KGEKGDPGVGLPGSPGPPGPPGRSATLRYVDAIDGSGSGDFDIDTEVIRGPPGPPGPPGK
PGLRGPPVGLSPGPMGPPGKDGKDGEIGNPGIPVIEDWFSGSAYDGDSGYDSGSGFDVES
GIDAGSTFELGLDLEGANGRDGEPGKEGQKGDKGEAGLPGNAGQKGDSGQPGLPGVPGVA
GPEGPKGKPGPPGPPGPPGPPARFSFDVLDSDDSGVSGSSGFGPVLPRGPPGIPGLPGPP
GPQGKDGVNGLPGTSEMGEPGPAGPEGKPGLPGRNGEKGEKGEMGQKGERGLDGVSLPGP
AGPPGPPGPVLNLQDLMLNDTESLYNFTGLFEPRGPLGPRGPKGDRGIPGVQGPPGLKGE
KGEPGITIGADGSWLSGVTGPQGPKGLKGDSGDPGLPGVMGPVGPTGPKGEFGFPGRPGR
PGLNGRKGEKGDSNGLPGPPGPPGPPGRPGIFNCPKGTVFPIPPRPHCKTSINGNSTAEG
ASCSTSGAKGEKGERGLPGPPGPTIPMLGAGTTGEKGDHGFRGGKGEKGEAGMPGPPGMP
GTTGLVGPKGDSVIGPPGRQGLQGPPGSPGIGRPGTTGLRGPPGPPGPPGYSSAAVIPGP
PGPQGPPGPPGPAAGGSGSVKKYASLYAMKHEPYAVEEGTFSMVTDTSKLYLKVQGGWRE
IQLGGLIEVNSPTVLSQDDAHPLILAPRFSNTPKIHTGSALRLVALNTPLTGDLGSIHSV
NKQCRLQAQAMGIRDEYRAFLSHHLQDLIDIVQPPYRTSLPIVNLRGEVLFKNWESIFSN
HILPGGIPLYSFDGRDVMSDPFWPQKAIWHGSSERGRRLEDKNCESWRAGDMAITGQASF
LYSGLLNQQTRSCSNQFVVLCIETNPNQNTVNELKQAQYRHRRWHYRY
NT seq
3927 nt
NT seq
+upstream
nt +downstream
nt
atgactcgcggagatatgcctttcttaagactgccgccctggtgctgcttgttcctcgct
gctttgtggcttttccatccagcgactgcgttccagctgcaggacgagaggggctcgagt
aaccagctggatctgacggagctcattggtgttccactccctccatccgtctcttttatc
actggatttgagggttttccggcatacagctttggtccagacgctaacgtaggccgcctc
acacgctccttcattcctgaccccttcttccgcgactttgctattattgtcactgctaaa
cccaccactcgccatggaggagtcctgttcgccatcaccgatgccctacagaagatagtg
cacttgggagtagcattggcaccagtggaggatgggtcacagcgagtagttctgtactac
actgaaccaggaaccacaagcactcaggaagcagcttcctttaagatggcagacctgaca
ggccgctgggccagattcactctggctgtgcaggggcatgaggtgaagctctatatggat
tgcgaggagcaccacagggtttctttccataggagccagaagagtcttacatttgagccc
agctcaggcatctttgtggggaatgcaggaggaaccaggctggagaggtttgtgggatct
atccagcagttggtgttgactccagatcctagggcaccggatgagcagtgtgaggaggat
gacccctatacatctgggtatggcagtggtagtgatgagtatgatgacacggagaccaca
gacgaagtgaagaaagtgcacgaggagagagaataccctgtacctgatgaagatcagaca
cttcctgtcagagcgccccctactgaagcttcttctaaagttccgtttgatgatgaggac
ttggaggaagagtcctcaggtcaggacgtggtgcttactgagagagagccaaacaggaca
gagaaagctgtatataacaaaggagatgattatccgctgatgatgccagtccataaaggg
gagaaaggagaccgtggacctgctggacctcctggccctccaggacccccaggcacagcg
agctcatcaggccctaaaggagatatctcatcttgggtaggagaaccaggggctcagggc
cctccaggacctacgggtgcaccagggaaggatggccttcctggtagtcgtggagaagat
ggaaaaccaggaggaactggagctccagggttcccaggtatacctggtgatccaggaata
aagggagaaaagggtgatcctggagttggtctgcctggatctcctgggcctccgggacca
ccaggacgatcagcgacactccgatatgtggatgccattgatggttcaggatctggggac
tttgacattgacacagaggttatcaggggtccacctgggcctccaggacctccagggaag
cctggtcttcgtggcccccctgtaggtctatctcctggtccaatgggacctccagggaaa
gatgggaaggatggggaaattggtaatcctggaattccagtaattgaggactggtttagt
ggttctgcatatgatggtgattctggatatgacagtggttctggatttgatgttgagtct
gggattgatgctgggtctacatttgagcttggcttagacctggagggtgctaatggcaga
gatggtgaaccaggaaaagagggccagaaaggggacaagggtgaagctggattacctggg
aatgcaggacaaaagggtgactcaggacagccaggcctcccaggggtaccaggggtagca
ggaccagaaggtccaaagggaaaacctggcccaccaggacccccaggacctccaggtcca
cctgcacgcttcagttttgatgtactggattctgacgactctggagtgtctggaagcagt
ggctttgggccagttctccctagggggcctcctggtatacctggtttgcctggcccccca
ggaccacagggaaaagatggtgtgaacggtcttccaggtacttcagagatgggggagcct
ggtcctgcaggacctgaagggaaacctggacttcctggaagaaatggcgagaaaggagag
aaaggggaaatggggcagaagggagaaagaggtctagatggagtcagtcttcctggtcca
gcagggccacccggaccaccaggacctgtcctcaaccttcaggatttaatgctgaacgat
actgagagcctttacaacttcacagggctttttgaacctcgaggtcctttggggccgaga
ggtccaaagggtgaccgcggcatcccaggagtccagggccccccagggttaaagggtgag
aaaggagaaccagggatcactattggtgcagatggatcatggttgtctggagtgactggg
cctcagggaccgaaaggactcaagggtgacagtggtgatcctggactgcccggtgtaatg
ggcccggtcggaccaacgggacccaaaggggaatttggatttcctggccgcccaggtcgt
cctggtctgaatggacgcaagggagaaaagggagactcgaatggactaccgggcccacct
ggtccccccggcccacctggacgtcccggaatattcaactgccccaaaggaacagtgttc
ccgattcctccccggccccactgtaaaacatccatcaatggcaattctactgcagaggga
gccagctgttcaacatctggagccaaaggggagaagggtgaaaggggtcttcctggccct
ccaggtcccacaattcctatgctgggtgcaggcaccacgggagagaaaggtgaccatggc
ttccggggcgggaagggagagaaaggcgaagctgggatgccaggaccaccagggatgcct
ggaacaactggattggtgggacctaaaggagattcagtcattgggcctcctggtcgtcaa
ggacttcagggcccacccggttctcctggtatcggaagacctggcaccaccggactccga
ggcccacctggacctcctggacctcctggctatagctctgctgctgttattcctggccca
cctgggcctcaaggtcctcctggtccaccaggaccagctgctggtggctctggctcagta
aagaaatacgcaagtctctatgccatgaagcacgagccgtatgcggttgaagagggaaca
ttttccatggttacagatacgagtaaactctacctcaaggtccaagggggttggagagag
attcagcttggagggttgattgaggtgaattcccctactgtcctttcacaagatgatgct
caccctttaatattggctcctcgattcagcaatactcctaaaattcacacaggaagtgcg
ctcaggctggttgccctcaacacaccactgactggggacctgggctccatccactcagtg
aataagcagtgcagactacaagctcaggccatgggcatccgagacgagtacagggctttc
ctttctcaccacctacaggacctgatcgacattgtgcagccaccctaccgcaccagctta
cccattgttaacctcaggggtgaagttctgtttaaaaactgggaaagcatcttctccaat
cacattctccccggtgggatccccctctactcttttgatggacgagatgtgatgagtgat
cctttctggccacagaaggccatatggcatggttcatcagagaggggaaggcgtcttgag
gataagaactgtgagtcctggagagctggtgacatggccatcacgggccaggcttctttc
ctctacagtggcctgctgaatcagcaaacccgtagctgctccaaccagtttgtcgttttg
tgcatcgagaccaatcccaaccagaacacagtcaacgaactcaaacaggcacaatatcgc
cacagacgctggcattacagatattga
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