Ictalurus punctatus (channel catfish): 108271739
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Entry
108271739 CDS
T04658
Name
(RefSeq) SWI/SNF complex subunit SMARCC2
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108271739
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ipu03021
]
108271739
03036 Chromosome and associated proteins [BR:
ipu03036
]
108271739
Transcription machinery [BR:
ipu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
108271739
Chromosome and associated proteins [BR:
ipu03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
108271739
PBAF complex
108271739
GBAF(ncBAF) complex
108271739
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
SWIRM-assoc_3
Myb_DNA-binding
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
108271739
NCBI-ProteinID:
XP_017334947
Ensembl:
ENSIPUG00000019879
UniProt:
W5U9I8
LinkDB
All DBs
Position
11:28200448..28222744
Genome browser
AA seq
1031 aa
AA seq
DB search
MAVRKKDGGPNVKYFEASDTVSQFDNVRVWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
EEVFGRHVSNPPLTKLPMKSFVDFKAGGALCHILAAAYKFKSDQGWRRFDFQNPSRMDRN
VEMFMTIEKSLVQNNCLTRPVIYLSSEIEPKLLGKLKDIIKRHQGSVTDDKQASSHVVVP
IPASLEEEEWVRPVMKRDKQMLLHWGYWPDSYDTWISASEVEAVVEDPPSAEKPRKVHAK
WILDLDQYNEWMNEEDYEVGEGGTRRKRISAKTLTDEVSAPDERRDKKPANAKKRKRSPS
PSPTPPPQESKKKNTKKGPTTPYNKSKRGQREEEQEDLTKDLDEPSPVPAAEESLNKTVT
KKDSDSTPVKGGTDGDEQEDEAMETVGKEEDEGSASVKGEPVKGSDLHEDNVTEQTHHII
IPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTA
CRRNLAGDVCAIMRVHAFLEQWGLINYQVDSESRPTPMGPPPTSHFHVLADTPSSLVPLQ
PKASQTPSSQPILSFPDKVKEKTTDLQNFGLRTDMYSKKSGPSKGKNAASATREWTEQET
LLLLEGLEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEEGATALGPLVYQPVPF
SQAGNPVMSTVAFLASVVDPRVASAAAKSALEEFSRMKEEVPAALVEAHVRRVEEAARVS
GRPDPLYGLEGSGIAGTGLEDSDKPEESSDESKSSDAQNTEDKRDNSKESKDGVSEEEEK
QGENGKKEEEGGKEGETEREAEKTDSDTGDVEKEKEGKEGSEDGQREGESDGERKAKVER
DVGEGNLATAAASALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELET
IMDREREALEYQRQQLLADRQAFHMEQLKYAEMRARQQHFQQIQHQHHSNQPGNQPGNTP
PIPHQSAPNVNAPPPAPSLTPAAANTPSEAPPTSTSHGSSPNNIQPGAVHDSGTALTGDS
LNPSGPVTPAQ
NT seq
3096 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcggaagaaagacggcgggccgaatgtgaaatatttcgaagcctctgatacc
gtgtctcagttcgacaatgtccgcgtgtggctcgggaagaattataaaaagtatatccag
gcggagcctcccactaataaatctctgtccagtttggtggttcagctgctgcagtttcag
gaggaagttttcggacgacacgtcagcaatcctcctctcaccaaactaccgatgaagagt
tttgtggactttaaggcgggaggagcgctgtgtcacattcttgctgctgcttacaagttc
aaaagtgaccaaggatggaggaggttcgatttccagaatccttctagaatggaccggaac
gtggagatgtttatgaccatagagaagtctctggtacagaataactgtctgactcggccg
gtgatctacctgagctcagagatcgaacccaaacttctgggaaaactgaaggatatcatt
aaaagacaccagggctcagtaactgatgataaacaggccagttctcatgtggtggttccg
attcccgccagtctggaggaggaggagtgggtccgacctgtgatgaagagagataaacag
atgctgctgcactggggttactggcctgacagttacgatacctggatctcagccagtgaa
gtggaggcggtagtggaggatccacccagcgcagagaaacccagaaaggttcatgctaag
tggatcctggatctggatcagtataacgagtggatgaatgaggaagactacgaggtgggt
gaaggaggcacgaggaggaaaaggatctcagctaagactctgacggatgaagtgagcgct
ccagatgagaggagagataaaaaacccgccaacgccaagaaacgcaaacgctccccctct
ccatccccgactccgccccctcaggagagcaagaagaagaacaccaagaaagggcccact
accccttacaataagtcgaagcgaggtcagagggaggaggagcaggaggacttgaccaaa
gacctggacgagccgtcacctgtacctgcagcagaggagtccctcaataaaacagtgact
aaaaaggactcagactcgactccggtgaagggggggactgatggagatgaacaggaggat
gaggcgatggagacggtgggaaaggaggaggatgaaggttctgccagtgtgaagggagaa
ccggtgaaaggttctgatctgcatgaggataacgtgactgaacagacgcaccacatcatc
attcccagctacgctgcctggttcgactacaacagtgttcatgctattgagcgtagagct
ctgcccgagttcttcaatggaaagaacaaatctaagacccctgagatttatcttgcctac
aggaactttatgatagatacatatcggctgaacccacaggagtatttgacctctacagct
tgccgtagaaacctggcaggagatgtttgtgccatcatgagggtccatgcatttctggaa
cagtggggtttgattaattatcaggtggattctgagagccgtcccacccccatggggcca
ccacccacatctcacttccacgtcctggcagacacgccatccagtctcgtacccctgcag
ccgaaagcctctcagacgccgtcctcacagccgatactgtcgttcccggacaaagtgaag
gaaaaaacgacggatctgcagaactttgggctgaggacggacatgtacagcaagaagagc
ggcccgtctaagggtaaaaacgctgccagtgcaacacgggagtggactgaacaggaaact
ttgttactgttggagggtttggagatgtataaggatgactggaacaaggtgtcggagcac
gtgggcagccggacgcaggacgagtgtatcctgcacttcctgcggttgcccatcgaggac
ccgtacttggaggagggagcgacggctctgggtccgctggtgtatcagcccgtccccttc
agtcaggccgggaacccggtcatgagcaccgtggccttcctggcttccgtggtcgacccg
cgcgtggcctcggctgcagccaagtctgctctagaggagttctcccgtatgaaggaggag
gtaccagcggctttggtggaggctcacgtgcggcgtgtggaggaagcggcccgggtgagc
ggcagaccagatccactgtacggcttggagggcagcggcatcgccggaaccggcctggag
gacagtgataagcctgaggagagcagtgacgaaagcaagagcagtgacgctcagaacaca
gaggacaagagagacaacagcaaggagagtaaagatggagtgagtgaggaggaggagaag
cagggtgagaacgggaagaaagaagaagaaggaggtaaagaaggagagacagaacgagaa
gcagagaagacagactcggacacaggtgatgtagagaaggagaaagaaggaaaagaggga
tcagaggatggacaaagggaaggagagagtgatggagagaggaaagcgaaggtggagaga
gatgttggtgaggggaatctggccactgcagctgcctctgcgctcgctgctgctgctgtt
aaagccaagcacctggctgcggtggaggagaggaagatcaagtctctagtggctctgctg
gtggagactcagatgaagaagctggagatcaaactgaggcactttgaggagctggagacc
atcatggaccgagagagagaggcgttggagtatcagaggcagcagctcctggctgatcgt
caggcgttccacatggagcagttgaagtatgcggagatgagagcgcgccagcagcacttc
cagcagatacaacaccagcaccatagcaaccaacccggcaaccagcccggcaacaccccg
cccatcccccaccaatcggctcctaacgtcaacgccccgcctcctgcacccagcctcacc
ccggctgccgccaacacccccagtgaagctccgcccacttctacatctcatggctcctcc
cccaacaacatacagcctggagccgtgcacgactccggcactgcactaacaggagattcc
cttaatccctccggcccagtcacccctgcacagtga
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integrated database retrieval system
