Ictalurus punctatus (channel catfish): 108271812
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Entry
108271812 CDS
T04658
Symbol
si:dkey-28n18.9
Name
(RefSeq) sorting nexin-6 isoform X1
KO
K17920
sorting nexin-5/6/32
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
108271812 (si:dkey-28n18.9)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ipu04131
]
108271812 (si:dkey-28n18.9)
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
ipu04990
]
108271812 (si:dkey-28n18.9)
Membrane trafficking [BR:
ipu04131
]
Endocytosis
Macropinocytosis
Sorting nexins
108271812 (si:dkey-28n18.9)
Domain-containing proteins not elsewhere classified [BR:
ipu04990
]
Phox homology (PX) domain-containing proteins
Sorting nexins
108271812 (si:dkey-28n18.9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PX
Vps5
DUF1497
Motif
Other DBs
NCBI-GeneID:
108271812
NCBI-ProteinID:
XP_017335083
Ensembl:
ENSIPUG00000022821
UniProt:
A0A2D0RX53
LinkDB
All DBs
Position
11:complement(25184126..25193583)
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AA seq
371 aa
AA seq
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MEGSSDRSAPSVNANSIKITDVTQDGDMLTFAITSQKLNSDKGTCVFRTYEDFDWLHKGL
FSQEDVAGLHGVIFPPLPAKPLPSSSHTQTKVLKQLGFLALGDNWQLYCKALEFYLQQVA
AHSILGKSNALYSFLSSTELASKQRSKKGILDRLSQAVEEMRKEGHKDVEEFFHHERERN
THTTALFKATSEKFLDVVLTKQRLALACGHFSTSLHLCVNQDNPSAVVFSTICLKLSDIM
DAVKRNLDKVSENDAHTLGLGLDLESRYQDAKREMLFRRTCKLVELEIIVRNAEKAKPNK
KAVMDRVQKTTREEFNLISSVAKEEIEWYHKARVGVLRDFLTRWCETQLDAARESAALFS
QHLQAWKGFPV
NT seq
1116 nt
NT seq
+upstream
nt +downstream
nt
atggaaggctcaagcgatcggtcggcgccgagcgtgaacgctaacagcatcaagattacc
gatgtcacgcaggacggagacatgctcaccttcgccatcacgtctcagaagctgaacagt
gataaggggacgtgcgtcttcaggacgtacgaggatttcgactggctgcacaagggtctt
ttctctcaggaggacgttgcgggactccatggcgtcatattccctcctctcccagccaaa
cctctgccttccagctcacacacacagactaaagtgctgaaacagctgggcttcctggct
ctgggagataactggcagctttattgtaaggctttagagttctacctgcagcaggtggca
gcacacagcatcctgggaaaaagcaacgctctgtacagcttcctcagcagcacagagctg
gcctctaaacagcgcagcaaaaagggcatcttggaccgcctcagtcaggccgtggaggaa
atgaggaaggaaggtcacaaggatgtggaagagttctttcaccacgagagagaacgcaac
acacacacgaccgccctgtttaaagccacctcggagaaattcctcgacgttgtgctgaca
aagcagaggcttgctctggcatgtggccatttctccacttcattacatctctgtgttaat
caggacaatccgtccgccgtggtcttctccacgatttgtctgaagctgtcggatataatg
gacgcagtgaaaagaaatctcgacaaagtgtcggagaacgacgcacacaccttgggcttg
ggtttggatctcgagtctcgctaccaggatgcgaaacgagagatgttgttcagaagaacc
tgtaaactcgtggaactggaaatcatcgtcaggaacgcggagaaagccaaacccaacaag
aaagcagttatggacagagtgcagaaaactacacgggaggagtttaatctcatctcatca
gtcgcgaaggaagagatcgagtggtaccataaagcacgcgtaggtgtgttgcgagacttc
ctgacgcgctggtgtgagacgcagctggacgcggccagggaatctgccgccctcttctct
cagcacctgcaggcttggaaaggatttcctgtctga
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