Ictalurus punctatus (channel catfish): 108271845
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Entry
108271845 CDS
T04658
Symbol
itgb1a
Name
(RefSeq) integrin beta-1a isoform X1
KO
K05719
integrin beta 1
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03271
Virion - Rotavirus
ipu04145
Phagosome
ipu04510
Focal adhesion
ipu04512
ECM-receptor interaction
ipu04514
Cell adhesion molecules
ipu04530
Tight junction
ipu04810
Regulation of actin cytoskeleton
ipu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03271 Virion - Rotavirus
108271845 (itgb1a)
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108271845 (itgb1a)
04514 Cell adhesion molecules
108271845 (itgb1a)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
108271845 (itgb1a)
09144 Cellular community - eukaryotes
04510 Focal adhesion
108271845 (itgb1a)
04530 Tight junction
108271845 (itgb1a)
09142 Cell motility
04820 Cytoskeleton in muscle cells
108271845 (itgb1a)
04810 Regulation of actin cytoskeleton
108271845 (itgb1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ipu04131
]
108271845 (itgb1a)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ipu04147
]
108271845 (itgb1a)
04515 Cell adhesion molecules [BR:
ipu04515
]
108271845 (itgb1a)
04090 CD molecules [BR:
ipu04090
]
108271845 (itgb1a)
Membrane trafficking [BR:
ipu04131
]
Endocytosis
Phagocytosis
Integrins (complement receptors)
108271845 (itgb1a)
Exosome [BR:
ipu04147
]
Exosomal proteins
Proteins found in most exosomes
108271845 (itgb1a)
Cell adhesion molecules [BR:
ipu04515
]
Integrins
Integrin beta subunits
108271845 (itgb1a)
CD molecules [BR:
ipu04090
]
Proteins
108271845 (itgb1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Integrin_beta
Integrin_b_cyt
Integrin_B_tail
I-EGF_1
PSI_integrin
EGF_2
RBP_receptor
Motif
Other DBs
NCBI-GeneID:
108271845
NCBI-ProteinID:
XP_017335187
Ensembl:
ENSIPUG00000000200
UniProt:
A0A2D0RYE5
LinkDB
All DBs
Position
1:complement(29857347..29906248)
Genome browser
AA seq
800 aa
AA seq
DB search
MDLKLLFISALLGVISYSSAQPEGNECIKANAESCGDCIQVGAKCGWCTDTEFLKQGEPT
SARCDELESLKKRGCSVLKIENPQGSLKILKDKPVTNRKKGGEKLKPEDITQIQPQKLAV
SLRSGEPQTIDLKFKRAEDYPIDLYYLMDLSYSMKDDLENVKNLGTSLMLEMSKITSDFR
IGFGSFVEKTVMPYISTTPAKLLNPCTGDQNCTSPFSYKNVLKLTSNGKQFNTLVGQQQI
SGNLDSPEGGFDAIMQVAVCGDHIGWRNVTRLLVFSTDAGFHFAGDGKLGGIVLPNDGKC
HLENNMYTMSHHYDYPSIAHLVQKLSENNIQTIFAVTEEFQPVYKELKNLIPKSAVGTLS
ANSSNVINLIIDAYNSLSSEVILENSKLPEGVTITYQSRCKNGVVSVGEEGRKCSNISIG
DEVAFSINITVNGCPKQGKAQILKIRPLGFTEEVEIKLSFICDCECQKNGIANSDLCHNG
NGTFECGACRCNKDRIGRECECWKDEVSSEDLEKTCRKDNGTDLCSNNGECVCGKCECKK
RDNPEEYYSGEYCECDNFNCDRSSNKLCGGHGRCVCRACVCDANYTGSACDCSLDTSTCL
ASNNQICNGRGICECGICKCTDPKFQGPTCEICPTCPGVCTEHKACVQCRAFGTGEKKDT
CERDCSYFTLIKVKHTDDLPQPVQAFPLMHCKERDANDCWFYYTYSVTNHTEVHVVETLE
CPAGPDIIPIVAGVVAGIVLIGLALLLIWKLLMIIHDRREFAKFEKEKINAKWDMQDNPI
YKSPVNKFQNPNYGHKTAAF
NT seq
2403 nt
NT seq
+upstream
nt +downstream
nt
atggaccttaaactactttttatatcagcgttgttaggagtcatatcctacagcagcgcc
cagccagaggggaacgagtgcatcaaggctaacgccgagtcctgcggtgactgcatccaa
gtaggggccaagtgtgggtggtgcacagatacagagttcctgaagcagggcgagcccacg
tcggcacgctgtgacgagctcgagtccttaaagaagagaggatgttcggtgctcaagatt
gaaaaccctcaagggagcctgaaaatcctcaaggacaaacccgtgaccaaccgcaagaaa
ggaggcgagaaactcaaacctgaggacatcacacagatccagccccagaaacttgcggtc
agcctgagatccggagaaccacaaacaattgatctaaagtttaaaagggcagaggactat
cctattgacctgtactaccttatggacctgtcctactccatgaaagacgatctggaaaat
gtcaaaaacttgggcaccagcctgatgctggagatgtcgaagatcacatcagacttcaga
attggttttggctcgtttgtggagaagacggtcatgccctacatcagcaccacccctgcc
aagcttctgaacccctgcactggggaccagaactgcacaagtcccttcagctacaagaac
gtgctgaaactcaccagcaacggcaagcagttcaacacactggtgggtcagcagcagatc
tcaggaaatctggactctccagagggcgggttcgacgccatcatgcaagtcgctgtgtgt
ggggaccacattggctggagaaatgtcactcgtttgctggtgttttctacggatgcaggt
ttccactttgctggagatggaaaactgggtggaattgtgcttcctaatgatggaaaatgt
cacctggaaaacaacatgtacaccatgagccaccattatgattacccttcgatagcacat
ctggtgcagaaactgagtgaaaacaacatccagaccatcttcgctgtcacagaggaattt
cagcctgtttataaagaattgaaaaacctcattccaaagtctgcagtgggaacattgtcc
gcaaactccagcaacgtgatcaaccttattattgatgcgtacaattctttgtcttcagag
gtgattctagagaacagtaagctgcctgaaggagtcaccatcacatatcaatcccgctgc
aagaatggagtagtgagtgtcggagaggagggacgcaaatgctccaacatctcaattgga
gatgaggtcgccttcagcataaacatcacagttaatggctgccccaaacaaggcaaggct
cagatcctaaagatcagacctctgggcttcactgaggaagttgagataaaactgagcttt
atctgtgactgtgaatgccagaaaaacggcatcgcgaacagtgacctctgccataacggc
aatggcacctttgaatgtggcgcctgcaggtgtaataaggatcgtattggccgagagtgt
gagtgctggaaagacgaggtgtccagtgaggaccttgaaaagacctgccgcaaggacaac
ggcaccgacctctgcagcaacaacggcgaatgtgtgtgcggcaagtgtgagtgtaagaag
agggacaaccctgaggagtactacagcggcgagtactgcgagtgtgacaacttcaactgc
gaccgctcctccaacaagctctgtggaggccatggccgctgtgtatgccgagcctgcgtt
tgtgatgctaactacacaggaagtgcatgtgactgctccttggatacgtcgacatgtctg
gcctccaataatcaaatctgtaacggccgaggcatatgtgaatgtggaatctgtaagtgc
actgatcctaaattccagggccccacgtgtgagatctgccccacctgccctggagtctgc
actgaacacaaggcgtgtgtgcagtgccgagcctttggtacaggagagaagaaggacact
tgtgagagagactgcagttacttcactctgattaaggtgaaacatacggatgacctgcct
cagcctgtacaagccttcccactcatgcactgcaaggagagagatgctaacgactgctgg
ttctactacacctactctgtcactaaccacaccgaggtccatgtcgtcgagactttagaa
tgcccagctggtcctgatatcatccccattgtggctggagtggtggcaggaatagtgctg
attggactagctcttctgttaatctggaaattgctcatgatcattcatgaccgccgcgag
tttgccaagtttgagaaagagaaaattaatgccaaatgggatatgcaagataatccaatt
tacaagagtcctgttaataagttccagaatccaaactatggacataaaactgcagctttt
taa
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