Ictalurus punctatus (channel catfish): 108271923
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Entry
108271923 CDS
T04658
Name
(RefSeq) protein SHQ1 homolog isoform X1
KO
K14764
protein SHQ1
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ipu03009
]
108271923
Ribosome biogenesis [BR:
ipu03009
]
Eukaryotic type
Sno RNPs
Box H/ACA snoRNPs
108271923
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SHQ1
SHQ1-like_CS
PIH1_CS
Motif
Other DBs
NCBI-GeneID:
108271923
NCBI-ProteinID:
XP_017335375
Ensembl:
ENSIPUG00000001247
UniProt:
W5U666
LinkDB
All DBs
Position
11:3659427..3723151
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AA seq
576 aa
AA seq
DB search
MITPAFELSQDSDFLTLVIRVPYTRTSEFDIDVDGEDFKFYAKPYFLRLTLPGRIVQDGR
EKASFDIDKGLFTMRVPKETSGQHFEGLHMLTSLLAPTGSRSAQPLVEEIGACSMSEPCQ
EDKDEEEDFDWQVEQQPYIESSEEDLKKLQKYGFGNLRTGVFSRLQEELSEVIDVEDPEN
STPAERRSDRLDSETTIFCTDHYLLDLYEGEEMRQVHLNFKPWWSELKPDSHAESAVTFT
DEEKEQMRKFTNRSYVLDKATRYHVWLSLVDIILAYTYDVRTTEGEHNVESAWTIRKISG
TLSWLETFHTLHEVLVSFGRRVLCYPLHRHFSLITTAVQDAARIFQGGKTFVLKCLLAVH
KIFRYNEPAYILNDLYITDYCIWIQRVKSKHMVALAEALSKAELSKNDLDLELQILEEAA
EMVIDEEQEEQIMKMAQEQTKECEEEDESGSSEEEEDPKSEEEERNGKNIPDGPAMTCPC
PQMLEHEESLIQELGEKREEELRSGEDVPQITVPSSSTAGEEAGGVEGLRKTDDPQLPAA
LCGVKHDTAPLEHRQFDVRISNTEELDSDDEDEPDQ
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atgataacaccggcattcgagctgagtcaagactccgacttccttacgctggttatccgc
gttccgtacacgaggacatccgagttcgacatcgacgtagatggagaggacttcaaattt
tacgccaagccctattttctcaggttgactctgcctggaaggatagtccaagatggaaga
gaaaaggcttcatttgacattgataaaggtctcttcacaatgcgagtccctaaggagaca
tcaggacagcactttgagggactgcacatgctgaccagtctcttggcccccacaggttcc
aggtctgcacaacctctggtggaggagattggagcatgcagcatgagcgagccatgtcag
gaagataaagatgaagaagaggattttgattggcaggtagaacagcagccatacattgag
tcctcagaagaagacctgaaaaagctgcagaaatatggcttcgggaacctcaggactggg
gttttctctcgactacaggaggagctgtcggaagtgatcgatgtggaagaccccgaaaac
tccacccctgccgagcggagatctgatcgcttggattcagagaccaccatattctgtacc
gaccactatctgttggatttatacgaaggtgaagagatgaggcaagttcatcttaatttt
aagccatggtggagcgagctgaagccagactcccacgccgaatccgctgtgactttcact
gatgaagaaaaagaacaaatgagaaagttcacaaatcgttcctatgtgctggataaggca
acccgatatcatgtctggcttagtctagtggacatcatcctggcctacacctatgatgtg
cgcactacagaaggagaacacaacgtggagtcagcatggaccatcagaaaaatcagcggg
actctaagctggctggagacgtttcacactctacatgaggtgctggtgtcgtttggccgc
agggtgctgtgttaccctctgcaccggcacttctctctgatcacgacagcagtgcaagac
gccgctcgcattttccagggtggtaagacctttgtcctgaaatgcctgctggccgtccat
aagatcttcagatacaatgagccggcttacatcctcaatgacctctacatcaccgactac
tgcatttggatccagcgggttaagtccaagcacatggtggccctggctgaagcattaagc
aaagctgagctgagcaagaacgacctggacctggagctgcagattctggaggaagccgct
gagatggtgatagatgaggaacaggaggagcaaataatgaagatggcgcaagagcaaacg
aaagaatgtgaagaggaggacgagtccggcagcagtgaggaagaagaggatccgaagagt
gaagaagaggagcgaaacggtaaaaatatacccgatggaccagcgatgacttgcccctgt
cctcaaatgcttgagcatgaagaaagcctgatccaggagctgggagagaagcgagaggag
gagctgaggagcggagaggacgtgcctcaaataaccgttccttccagcagcacagcagga
gaggaagcgggaggggtggagggactgagaaagacagacgacccccagctccctgcagct
ctgtgtggagttaaacacgacacggctccgttagagcatcgccagtttgacgtacgcatc
tcgaacaccgaggaactggacagcgacgatgaggacgagccggatcagtga
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