Ictalurus punctatus (channel catfish): 108272027
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Entry
108272027 CDS
T04658
Name
(RefSeq) cysteine protease ATG4B isoform X3
KO
K08342
cysteine protease ATG4 [EC:3.4.22.-]
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04136
Autophagy - other
ipu04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
108272027
04136 Autophagy - other
108272027
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ipu01002
]
108272027
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ipu04131
]
108272027
03029 Mitochondrial biogenesis [BR:
ipu03029
]
108272027
Peptidases and inhibitors [BR:
ipu01002
]
Cysteine peptidases
Family C54: Aut2 peptidase family
108272027
Membrane trafficking [BR:
ipu04131
]
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
108272027
Mitochondrial biogenesis [BR:
ipu03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
108272027
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C54
ATG4_LIR
Motif
Other DBs
NCBI-GeneID:
108272027
NCBI-ProteinID:
XP_017335596
Ensembl:
ENSIPUG00000013600
UniProt:
A0A2D0RZI3
LinkDB
All DBs
Position
11:complement(14876028..14886856)
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AA seq
395 aa
AA seq
DB search
MDAGKAPTLTYDTLRFGEFEDFPETSEPVWVLGKQSNALTEKDEILSDITSRLWFTYRKN
FQAIGGTGPMSDTGWGCMLRCGQMILAEALLRRHLGREWRWVRGQQPKEEYMSILNAFID
RKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSRLAVHVAMDNTVIIE
EIKRLCMPWLDFERGGCADPLEMNGYMEGACAMALEDTAVWKPLVLLIPLRLGLSDINEA
YIETLKQCFMMPQSLGVIGGKPNSAHYFIGFVGEELIYLDPHTTQPAVEPFENGEIQDDS
YHCQHPPCRMHICELDPSIAVGFFCQTEDDFDDWCAHIRKLSCCRGGLPMFELVDSQPSH
LISTEAINLTPDFSDSDRLERFFDSEDEEFEILSL
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atggatgcgggtaaggctcctactcttacctacgacacactacgatttggggagtttgag
gatttcccagagacgtccgagcctgtctgggttctagggaaacagtccaatgctctgaca
gagaaggatgagattctgtcagatattacgtcacgcttgtggttcacctacagaaagaat
ttccaggcaattggaggaacagggcctatgtctgacacgggctggggatgcatgctgcga
tgtggacagatgattcttgctgaagcgttgctccgcagacacttgggtcgtgagtggaga
tgggttcgaggtcagcagccaaaagaggagtatatgagcatcctcaatgccttcatagac
aggaaggacagctactattctattcaccagatagctcagatgggagtgggagagggtaag
tccataggccagtggtatggcccgaatacagtggcacaggtactcaagaagctggcagtg
tttgacacatggagccgattggcagttcacgtggccatggacaacacggtcataatcgag
gaaattaagaggttgtgtatgccatggttggacttcgagaggggagggtgcgcagatcct
ctggagatgaacgggtatatggagggggcgtgtgccatggctttggaagacacagctgtg
tggaaaccacttgtgctgctcattcccctgcgcctgggccttagcgatatcaacgaggcc
tacattgaaactctaaagcaatgcttcatgatgcctcagtctttaggggtcattggtggg
aagccgaatagtgcccattacttcatcggctttgttggtgaggagctcatatacctggac
ccccatacaactcagccggctgtggagccgtttgaaaacggagagattcaggatgactct
tatcactgccagcacccaccgtgtcgcatgcacatctgtgagctcgacccatccatagct
gtcggatttttctgtcaaacagaggacgactttgatgattggtgtgcacatattcgaaaa
ttatcctgctgtagaggaggtcttcccatgttcgaacttgtagatagtcagccatcacat
ctaatcagcactgaagccattaatctcactcctgatttctcagactcggaccggcttgag
cgtttctttgactctgaagatgaggagtttgagatcctgtctttgtga
DBGET
integrated database retrieval system
