Ictalurus punctatus (channel catfish): 108272047
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Entry
108272047 CDS
T04658
Name
(RefSeq) double-stranded RNA-binding protein Staufen homolog 1 isoform X1
KO
K17597
double-stranded RNA-binding protein Staufen
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ipu01009
]
108272047
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108272047
Protein phosphatases and associated proteins [BR:
ipu01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
108272047
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
108272047
mRNA cycle factors
Stress granule specific factors
108272047
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
dsrm
Staufen_C
DND1_DSRM
Motif
Other DBs
NCBI-GeneID:
108272047
NCBI-ProteinID:
XP_017335632
Ensembl:
ENSIPUG00000023725
UniProt:
A0A2D0RYQ2
LinkDB
All DBs
Position
11:8847315..8860556
Genome browser
AA seq
699 aa
AA seq
DB search
MSQLQFHSPGSPVPTSAPLPLAQPQPGFSIPSATGSLPSESASHPLRSSALPSASATPFC
NPTASNMANPKEKTPMCLVNELARYNKIQPEYKLLSEQGPAHSKIFTVQLTLGEQHWDAE
GTSIKKAQHSAAACALTQTTLPKPNNRIQRHQGRNPGGFYRGPESDSMTHTVELNALCMK
LGKKPIYKLIDPYQGMRPTFNYNIRAPGPYARSMQQYYYPFPPVAPVLYHMELSIGGQQF
HGKGRTRQAAKHDAAAKAIKLLQKEPLLQQLVEMKKEPEEENLNKSEISQVFEIALKRNM
PVNFEVLKEAGPPHMKSFVVKVSVGEFSGEGEGKSKKIAKKLAAIAVLEELRKLPQLPVT
DKMPPRIKKKTKSIIKLQTSPEYGQGINPISRLAQIQQAKKEKEPEYILVTERGLPRRRE
FVMQVSVIGQTAEGMGPSKKVAKRNAAEKMLELLGFKVPQPQPPKPALKTEEKPPLKKPG
DGRKVTFFEPGSVEEVGLVPKEEDYRVPFHSHQQLPAGILPMVPEVAQAVGASQGPHTKD
YGRPNQAKASLTATIANELLYAGISPTAEGILKGSKNLAMRPHGPFTKPSEQLGYLATVQ
GLQVEYKDFPKNNKNEFVSLINCSSQPPLISHGIGKDVESCHDMAAFNILKLLSELDQQS
SERPANGPISGCGKQDLEGDTLLKPANSSTMGKTLDGAV
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atgtcccagcttcagttccactctcctggtagccctgtacccacttctgctcctttaccg
ctagcacagccccaacctggcttcagcattccttctgctactggctccttaccttcagaa
agtgccagtcacccgctacgaagctccgccctgccctctgcctcagctacgcccttctgt
aaccctacagcttctaacatggcaaaccctaaagagaagacccccatgtgtttggtgaat
gagttagcccgttacaataagatccagcctgagtacaagctactcagcgagcaaggacca
gcccattccaagatatttaccgtacagttgactctgggggagcagcactgggatgcagag
ggcaccagtataaagaaagctcagcactctgcagcagcctgtgctctcacccagaccaca
ctgcccaaacccaataacagaatccagcgacaccaaggcaggaacccaggtgggttctac
agaggcccagagtcagacagcatgacgcacactgtggagctgaatgcactttgtatgaag
ttggggaagaagccaatctataaacttatagacccataccaaggcatgagacccacattc
aactacaatatcagagcaccggggccttatgctcgctccatgcaacagtattactaccca
tttcctccggtggcaccggtactgtatcatatggagctatccattggagggcagcagttc
catggaaagggccgcacacgccaggcggctaaacatgatgctgctgcaaaagctatcaaa
ttactgcagaaagagccactgttacagcagctagttgagatgaaaaaagaaccagaagaa
gaaaacctcaacaaatctgagatcagccaagtgtttgagattgcactgaagcggaacatg
cctgtgaactttgaggtgctgaaggaggcaggaccacctcatatgaagagctttgtggtg
aaagtgagtgtgggagagttcagtggagaaggggagggcaagagcaagaagatcgccaag
aagctagctgccattgctgttctggaggagctgcggaagttgccacaactaccagtcacg
gacaagatgccacctcgtattaaaaagaaaaccaaatccattataaagttgcagaccagt
ccagaatatgggcaaggcataaacccaatcagcagactggctcagatacagcaggctaag
aaagagaaagagcctgagtacatcctagtgactgagagaggactacctcgacgtagggag
tttgtcatgcaggtgtcagtcattggtcagactgccgaaggtatgggtccaagtaaaaag
gttgccaagaggaatgcagcagagaagatgctggagctcttgggatttaaagtgcctcaa
cctcagcctcccaaaccagcactgaaaacagaagagaagccccctctgaaaaaacctgga
gatggacgtaaagtgaccttttttgagccgggctccgtggaggaggtgggtctggttcca
aaggaggaggattaccgtgtgcccttccacagccatcagcagcttcctgctggcattcta
cccatggttcctgaggtggcacaagcagttggtgccagccagggaccccataccaaggac
tacggccgccccaaccaggccaaggcttcactgacagcaacgattgccaatgagctgctg
tacgctggtatttccccaacagctgaaggcatattgaaaggaagtaaaaacctagcaatg
agaccccacggccccttcactaaaccgtctgaacagcttggatacctggccaccgtacaa
ggcctacaggtagaatacaaggactttccaaaaaacaacaagaacgaatttgtgtctcta
atcaactgctcttctcagccgccacttataagccatggtatcgggaaggacgtggagtcc
tgtcacgacatggctgcattcaacatattgaagctgctctcagagttggaccaacagtcc
agtgaacggccagccaacggaccaatttctgggtgcggcaaacaagaccttgaaggtgac
acgttgctcaaaccagctaactcaagtaccatgggaaaaactctggacggcgctgtgtag
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