Ictalurus punctatus (channel catfish): 108272110
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Entry
108272110 CDS
T04658
Symbol
pdzrn3b
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3-B isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ipu04121
]
108272110 (pdzrn3b)
Enzymes [BR:
ipu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108272110 (pdzrn3b)
Ubiquitin system [BR:
ipu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
108272110 (pdzrn3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
Sina_ZnF
zf-RING_5
zf-C3HC4_3
zf-C3HC4_4
Prok-RING_4
zf-TRAF
PDZ_Tricorn
TRAF3_RING
zf-rbx1
RING_XB3-XBAT31
zf-RING_6
zf-RING_16
Motif
Other DBs
NCBI-GeneID:
108272110
NCBI-ProteinID:
XP_017335790
Ensembl:
ENSIPUG00000001304
UniProt:
A0A2D0S0Q2
LinkDB
All DBs
Position
11:3467711..3574755
Genome browser
AA seq
1048 aa
AA seq
DB search
MGFELERFSGAVDPDLKCNLCHKVLEEPLTTPCGHVFCAACVLPWVAQQRSCPAQCRRRV
SAQELHHVPPLKSLVLKLDIRCEHHARGCRQVVKLQQLAEHAEACDFAPARCRNDGCSEV
LNLKDVHLHMRDACEYRPAGVCEQSCGLGLTHRERYLDGHCCVRSLKAHNSALQAKVTTL
EKECKKQAMRASKREKSLLAQLSSVHNELQMTALRYQKKFTEYSARIDSLTKSFAPPVKG
GESKSVTVVLHRESGSLGFNIVGGRPCLDNEDGTSNDGIFVSKIVEHGPVDKEGGIQIHD
RIMEVNGKDLSSATHEQAVEAFRTAKEPIMVQVLRRTPRPKPAGPEADAQLMDISTQTDI
TFQHIMALSKLPASTPPALDQYMLPEGHSPGHEYFDPNDYLETMPQDMEREELEYEEVDL
YRTNIQDKLGLTVCYRTDDEDETGIYVSEIDPNSIAARDGRIREGDRIIQINGIEVQNRE
EAVSLLTSEENRNVCLLVARPEIQLDDGWMEDDRNDFLDDLHMDMLEQQHHQAMQFTASM
LQQKKPVEDGGLMDTGTLLSQQHEKDSGVGRTDESTRNDESSEQENLCDDQTSASTTLGS
HRRLAYSQDTLGSSDLPFSNESFISADYTDADFLGDFPADECEHFRELLELKCQVRSGGG
LGISWPSFGIDGGQGFGGAGDDDVDKELELLNAELRNIELECLSIVRAHRTQQLRDQPWM
LHNSGFRNYNTSVDARRHELADISELPEKSDKDSSSAYNTGESCRSTPLTLELSPDNSLR
RASEELAEASAGGTVTGPNTRVLRPLLSPVQEASGSSRSHTSSPKEPDAGHHSEAKERKS
SRLSHPHSPYKHAHIPAHAQHYQSYMQLIQQKSAVEYAQSQMSLASMCRDPVSAEPKAEW
KVKIRSDGTRYITKRPARDRLLKERALRIREERSGGMTTDDDAASELKMGRYWSKEERKQ
HAVRAKEQRQRREFMKQSRTDWLKEQSGSGTDDKKEVNIIELSHKKMMKKRNKKIFDNWM
TIQELLTHGARSPDGTRVYNSLLSVTTV
NT seq
3147 nt
NT seq
+upstream
nt +downstream
nt
atgggcttcgagttggagcggttcagcggtgccgtggacccggacttgaagtgcaatctc
tgccacaaagtgctggaggagcctctgacaacgccgtgcggccacgtcttctgtgcggcg
tgtgtgttgccgtgggtggctcagcagcgcagctgtccggcgcagtgccggcggcgtgta
tcagcccaggagcttcaccatgtgccgccactcaagagcctggtgctcaagctggacatc
cgctgcgagcatcacgcacggggctgccgccaagtcgtcaagctccagcagctcgccgag
cacgcagaggcgtgtgacttcgccccggcgcgctgccgcaacgacggctgcagcgaggtg
ctcaacctcaaggacgtgcacttgcatatgcgcgacgcctgtgagtaccggccggctggc
gtctgcgaacagagctgcgggctcggcctcacgcaccgagagcgctatctggacggccac
tgctgcgtgcgctcgctgaaggcgcacaacagcgcgctacaggccaaagtcaccaccttg
gagaaggagtgtaaaaagcaggcgatgcgcgcgagcaaacgggagaagtcactgctggca
caactctcatccgtgcacaacgagctgcaaatgacggcgctccgctaccagaaaaagttc
accgagtacagcgcgcgcatcgactcgctcaccaagagctttgcgccgcctgttaagggt
ggcgagagcaaaagtgtcacagttgtgctccacagagaatctggatctttgggctttaat
attgttggaggaagaccatgtttggacaatgaagacgggacttcaaatgacggtatcttt
gtatcaaagattgtggagcatggaccagtggataaagaaggaggaattcagattcatgac
agaataatggaggtaaatggcaaagacctgtccagtgctactcatgagcaagcagtagaa
gccttccgcacagccaaagagcctatcatggtgcaggtgttgcgcaggacgccgaggccc
aaaccagcaggacctgaagcagacgcacagctgatggacatcagtacacagacagacatc
accttccagcacattatggccctcagcaagctgcctgcctcaacacctcctgcacttgat
cagtacatgctacctgaaggacattctcccgggcatgagtatttcgacccgaatgattac
ctagagaccatgccgcaagatatggaaagagaggaacttgagtatgaggaagtggatttg
tacaggacaaatatccaggacaagctgggcttgactgtgtgctataggactgatgacgag
gatgaaactgggatatacgtcagcgagattgatccaaacagcattgctgcaagagatggt
cgaatcagggaaggggaccgaatcatccagatcaatggcatagaggtgcagaatcgggag
gaggcggtgtctctgctcacaagtgaagagaaccgcaatgtgtgcctgctggtggctcgg
ccggagatacagctcgacgacgggtggatggaagatgacagaaatgatttcctggatgat
ctgcacatggacatgctcgagcagcagcatcatcaggccatgcagttcactgccagcatg
ctccaacagaagaagccggtggaggatggaggcttgatggacacaggaacactgctctcg
cagcagcatgaaaaggacagtggcgtgggacgcacggatgaaagcacccgcaatgatgag
agctcagagcaggagaacctctgcgatgaccagaccagtgcatctaccacactgggcagt
cacagacgtctggcatacagtcaggacacgctgggaagcagtgaccttcccttcagcaat
gagtctttcatctcggccgactacaccgatgcagatttcctgggtgacttcccagctgat
gagtgtgagcacttcagggagctgttggagcttaaatgccaggtgaggagtgggggtggc
ttgggcataagctggcccagttttggcatagatggcggacaaggatttggtggtgcagga
gatgatgatgtggacaaggagctggagcttcttaacgctgagctgcgtaacatcgaactt
gaatgcctgagcattgtgcgggcgcaccgtacacagcaattacgtgaccagccatggatg
ttgcacaatagtggcttccgcaactacaacacaagtgtggatgcgcgtcgccatgagctg
gctgatatcagcgagctgccagagaagtcagacaaggacagctcaagtgcttacaataca
ggagagagttgccgcagcacaccacttaccctggagctatcaccggacaactctttacgc
cgagccagtgaagagcttgcagaagccagtgcaggaggtactgtaaccggtcccaatacc
agagttttaaggcccctgctttcacctgtccaagaggcttctggctcaagcaggagccac
acttcttctcccaaagagcctgatgctggccaccattctgaggccaaagaacgcaagtcg
agtcgcctcagccatccacactcaccctacaaacatgcccatatcccagcacacgcacag
cattatcaaagttacatgcagttgattcagcagaagtcagctgtagagtacgcacagagc
cagatgagtcttgccagcatgtgccgggatccagtatcggccgagcccaaagcagagtgg
aaggtgaagatacgcagtgatggtactcggtacatcaccaagaggccagcacgtgaccgc
ctgttgaaggagcgtgccctgcgcatccgagaggaacgcagtgggggcatgaccacggac
gatgacgcagccagtgagctgaagatgggccgctactggagcaaggaggagcgtaagcaa
cacgccgtacgtgccaaagaacaacgtcagcgacgcgagttcatgaagcagagtcgcaca
gactggctgaaggagcagagtgggagtggcactgatgacaaaaaagaggtcaacatcatt
gaactaagtcacaaaaaaatgatgaagaaacgcaacaagaagatcttcgataactggatg
accatccaggaactgctcacgcatggtgcaaggtctccagatgggacgcgagtgtacaac
tcgctgctgtcggtgaccacagtgtga
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integrated database retrieval system
