Ictalurus punctatus (channel catfish): 108272119
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Entry
108272119 CDS
T04658
Name
(RefSeq) RNA-binding protein 26 isoform X1
KO
K13192
RNA-binding protein 26
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ipu01009
]
108272119
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108272119
03041 Spliceosome [BR:
ipu03041
]
108272119
Protein phosphatases and associated proteins [BR:
ipu01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
108272119
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
108272119
Spliceosome [BR:
ipu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
108272119
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup35_RRM_2
RRM_1
PWI
RRM_Nup35
zf-CCCH
RRM_PARP14_3
zf_CCCH_4
RRM_3
RGS-like
Fasciclin
Motif
Other DBs
NCBI-GeneID:
108272119
NCBI-ProteinID:
XP_017335802
Ensembl:
ENSIPUG00000004579
UniProt:
A0A2D0RZ79
LinkDB
All DBs
Position
11:complement(23945672..23955071)
Genome browser
AA seq
1024 aa
AA seq
DB search
MIIENLDALKTWLSKTLEPICDADPSALAKYVVALVKKDKSEKELRALCIDQLDVFLQKE
TQMFVDKLFEAVNAKSYLPQAETLSSAGRTESHTRADKDELKKEELSRDDEREKKFSRRV
NHSPQSSSRYSRDSRRSDERKKDDRSRKREYERPPPRRDSYRERYNRRRGRSYSRSRSRS
WSKDRLRDRDRERERDRERERERERSRTRSRSRSRSRSRDRESGKPKYDHERPEGGATEA
YVPPPLASVPSSSHFPVPALSSTITVIAPTHHGNSTTESWSDFHQDHVPYGRAAPPPSRK
RCRDYDEKGFCMRGDMCQFDHGSDPVVVEDVNLPSILPFPPAPLPVGDGQPPPGLPPPPP
GLLPPPPVNLRPPVAPGSLPPVAGPPPPLPALDAPPNSMTSSVPSIVSTSRPLLPQPPLH
LVTSGIRPPLSQPLPPLFTSGNHSNRYSFEPDMYNPEAPSLNSRPAYRPRVNVQRPNLIG
LTMGEVDLPPRDKMLNSNTARIVLESDSRKRGAGHHDGGLPSKKPWFDKPNFNKPNHHGY
HNKKVPFPLPNTKLAIRQIPPELNNISKLNEHFSKFGKIVNLQVAYNNDPESALIQFESP
DEAKRAMQSTEAVLNNRFIRVHWHRDDGLLGTPSHTLLNVSVQQPEATSLKQSVKDRLGP
LPSNSAEPLHDATPPSQSSQSAARSSVKDRLGFSKPAPAEGKVFSTSTGLTKTFYNPAAL
KPGQKGAMTGTAPGAEDALKKKKQEALKLQQDVRKKKQEILEKHIETQKLLISKLEKNKS
MKAEDKAQLMQTLNALTNSISKLQEEIKGLSGTRPLHSGIKTKAQAQKELLDTELDLYKK
TQAGEDTAQLKLRYTQLQLEAAKRGILTPGRGRGAQARGRGSARGRGRGIRGRPRGAPTH
SVVDHRPRALEISGFTEADRVDLLPHFAQFGEIEDCQMEDSSLGAIITFRTRTEAEQAAV
HGVRLNNQDLRLSWYKPAIPLSAADADEAEPEEEEFQEDSLVDDALLQDDDEEEDDNEPR
SWRR
NT seq
3075 nt
NT seq
+upstream
nt +downstream
nt
atgataattgaaaacctcgatgccttgaagacgtggctctccaaaaccctggaaccaata
tgtgacgctgacccgtctgcgctcgctaaatacgtggtggccttggtgaagaaggacaag
tcggagaaggagctgagagcactatgcatagaccagttggatgtattcctccagaaggag
actcagatgtttgtggataaactttttgaagctgtgaacgcaaagagctacctacctcag
gctgagacgctgagctccgcaggcaggaccgagagccacacacgcgccgacaaagacgag
ctgaagaaagaggagctgagtcgggatgatgaacgggagaagaagttctccagaagagtg
aaccacagccctcagtccagctcacgttacagccgagacagcaggaggagtgacgagcgt
aagaaagacgatcggtccagaaagcgagagtacgagcgtcctccgcccagacgtgactca
tatcgtgaacgctacaaccgacgcagggggcggagctacagccgtagtcggagtcgcagc
tggagcaaagacagattgcgagaccgcgatcgagaaagagagcgagaccgagaacgtgag
agggagcgggaacgcagcaggacgcgctctcgtagccgctccaggtctaggagtcgagac
agggaatctggaaaaccaaagtatgaccacgagcggccagagggcggcgccaccgaggcc
tacgtacccccacccctcgcctctgttcctagctcctcccacttccctgtacccgccctc
agcagcaccatcaccgtcatcgctcccactcaccatggcaacagcaccacagagagctgg
tctgacttccaccaggaccacgtcccttacggcagagcggctccgcccccttcacgcaaa
cgttgtcgtgactacgacgagaaaggtttctgtatgcgaggcgatatgtgtcagttcgac
cacggcagcgatccagtggtggtggaggacgtcaaccttcccagcatcctcccgttcccg
cctgcaccacttcctgtcggggatggtcagccccctccaggtctgccaccgccacctccc
ggtctactccctcctccaccggttaacctccgcccccctgttgcaccaggcagcctccca
cctgtcgcaggtcctcctccacctctcccagcactggatgctcctccaaactccatgacc
agctccgtcccctccatcgtctccacgtctcgtcctctactccctcagcctccgcttcac
ctggtgacgtcaggcatccgacccccgctctcacagccgctgcctcccctcttcacctcg
ggtaatcactctaaccgctattcattcgaaccggacatgtacaaccccgaggctcctagt
ctgaactctcgccctgcgtatagaccccgggtcaacgtgcagaggccgaacctcatcggg
ctcactatgggagaagtggatcttcctccacgagataaaatgctgaacagcaatactgca
cggatcgtgttggaatcagactccaggaagagaggggcggggcatcatgatgggggactt
ccttctaaaaaaccctggtttgataagccgaacttcaacaagcccaaccatcacggctac
cataataagaaagtgccgtttccgctgccgaacactaagctggccatccggcagattccc
ccagagctgaacaacatcagcaagctcaacgagcacttcagcaaattcgggaaaatcgtc
aaccttcaggtcgcctataacaatgaccccgagagtgctctgatccagttcgagtctcca
gacgaagcgaagcgcgctatgcagagcaccgaggccgtcctcaacaaccgattcatcaga
gtgcactggcacagagacgacgggctgcttggcacgccgtcacacaccctgctcaacgtg
agcgtacagcagcctgaagccaccagtctgaagcagtcggtgaaagaccgtctcggcccc
ctgccctctaacagcgcagagccgctgcacgacgccacgcctccgtcacagtcttcccag
agcgccgcccgatcctcagtaaaggaccggctgggcttctctaaaccggcgccggctgaa
ggaaaggtcttctccacctccaccggactcacgaagacgttttataacccggccgcgctg
aagccgggccagaagggcgcgatgactgggacggcccccggcgccgaggacgcgctgaag
aagaagaagcaggaggcgctaaaactccagcaggacgtgaggaagaagaagcaggagatt
ctggagaagcacatcgagacacagaaactgctgatttctaagctcgagaagaacaagtcg
atgaaagccgaggacaaagctcagctgatgcagacactcaacgctctgacaaacagcatc
agcaaactgcaggaggagatcaagggcctgtccggcacacgcccactgcatagcggcatc
aaaaccaaggcccaggctcagaaggagttgttggacaccgaactcgatctgtacaagaaa
acacaagccggagaggacactgctcagctcaaactccgatacacacagctgcagcttgag
gcagctaagcggggcattctgaccccagggcgagggaggggggcccaagcccggggtcgg
gggtcagcacggggacgtggtcggggcattagaggcagaccaagaggggctcctacccac
tccgtggtggatcatcgaccccgtgctctggagatcagcggcttcaccgaggcagaccga
gtggatctgctgccgcactttgctcaatttggtgaaattgaggactgtcagatggaggac
tccagcctcggtgccatcatcaccttcagaacccgaacagaggcagaacaggctgcggtt
catggcgtcaggttgaacaatcaggacctgcgtctgtcctggtacaaaccagccatccct
ctaagtgcagccgacgccgacgaggccgagcccgaggaagaggagttccaggaggactcc
ctggtggacgacgcgctgctacaggacgacgacgaggaagaagacgacaacgagccacgc
tcctggcgaagatga
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integrated database retrieval system
