Ictalurus punctatus (channel catfish): 108272127
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Entry
108272127 CDS
T04658
Name
(RefSeq) cysteine protease ATG4C isoform X2
KO
K08342
cysteine protease ATG4 [EC:3.4.22.-]
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04136
Autophagy - other
ipu04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
108272127
04136 Autophagy - other
108272127
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ipu01002
]
108272127
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ipu04131
]
108272127
03029 Mitochondrial biogenesis [BR:
ipu03029
]
108272127
Peptidases and inhibitors [BR:
ipu01002
]
Cysteine peptidases
Family C54: Aut2 peptidase family
108272127
Membrane trafficking [BR:
ipu04131
]
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
108272127
Mitochondrial biogenesis [BR:
ipu03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
108272127
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C54
Motif
Other DBs
NCBI-GeneID:
108272127
NCBI-ProteinID:
XP_017335818
Ensembl:
ENSIPUG00000006632
UniProt:
W5UKU9
LinkDB
All DBs
Position
11:complement(19804687..19819729)
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AA seq
460 aa
AA seq
DB search
MEIKGNDEVEKIKSKFISAWNNVKYSWMLKTKTSFSRNSAVFLLGKCYHFKADDEDSPTE
SCSTDVFDDEPVMGNVDGFRRDFASRIWLTYRDDFATLPESNITTDCGWGCTLRAGQMML
AQALLLHFLGRDWTWPDALTLEPLDTETWTSSTARKLVASIEASFQGDRLRVPEPSCQPQ
CGAEEADAHLKEVYHRTIVSWFGDSLSAQLGVHRLVRLGMTSGKRAGDWYGPGVVAHILR
KAVEIATDPELRGVTVYVAQDCTVYNADVIESHSAQVDTHAAPEGALTDNRAVIILIPVR
LGGEKINPEYFSFVKAILSLEYCIGIIGGKPKQAYYFVGFQDDSMIYMDPHYCQSFVDVS
TSNFPLQSYHCPSPKKMPFIKMDPSCTIGFYSKSVQDYERISSELAKVLQPSSKEKYPAF
TFMKGHGRDYELSVPLEKREWPFIKDTRIPGATAGDFVLL
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atggagattaaagggaacgacgaggtggagaaaataaagtctaagttcatttcggcatgg
aataatgtcaaatacagttggatgctgaaaacgaagacttcctttagtcgcaattctgca
gtcttcctgctggggaaatgttatcacttcaaggcagatgatgaagacagtcctacagaa
agctgcagcacagacgtatttgatgacgaacctgtcatgggcaatgtggatggatttcgg
agggattttgcttcacggatctggctcacttatcgggatgatttcgccacgctgccggaa
tcgaacatcactacagactgtggctggggctgcactctcagagctgggcagatgatgctg
gcccaggcacttttactgcatttcttgggtagagactggacctggcctgatgcactgacc
ttggagcctctggacactgagacatggacgagcagcacagcacgaaaacttgtcgcctca
atagaagcttcattccagggagaccggctgagagtcccagaaccttcatgccagccccag
tgtggggcagaagaagccgacgcccacctgaaagaggtgtaccaccgcactatcgtgtcc
tggtttggagacagtctgtctgcccagctcggggtccaccggctggttcgtctgggtatg
acctcagggaaaagagcaggagattggtatggccctggagtagtggcacacatactcagg
aaagctgtggaaattgctacagatccagaactgcgaggtgtgactgtttatgtggcgcag
gactgcacagtgtacaacgctgatgttatcgagagtcactcagcgcaggtggacacacac
gcagcccctgagggagcgctcactgacaacagagccgtcatcattctcatccctgtcaga
ctggggggagagaagattaaccctgaatacttcagttttgtcaaggctatcctgagcttg
gagtactgtatcgggatcattggagggaaacccaaacaggcctactacttcgttggattt
caagatgacagcatgatttacatggaccctcattactgtcagtcttttgtggatgtcagc
acaagcaattttcctctgcagtcatatcattgcccatcaccaaagaagatgcctttcatt
aaaatggacccaagctgcactattgggttctactccaaaagtgttcaggattatgaaaga
attagcagcgagctggcaaaggtgctgcagccgtcatcgaaagagaagtacccggcgttt
acctttatgaaaggacacgggagagattacgaactgtctgttcctttggagaagagagag
tggcccttcatcaaagacacacgcattcccggggccacggcaggggactttgtgctgctg
taa
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