Ictalurus punctatus (channel catfish): 108272284
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Entry
108272284 CDS
T04658
Symbol
her6
Name
(RefSeq) hairy-related 6 isoform X2
KO
K06054
hairy and enhancer of split 1
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03460
Fanconi anemia pathway
ipu04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
108272284 (her6)
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
108272284 (her6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ipu03000
]
108272284 (her6)
03400 DNA repair and recombination proteins [BR:
ipu03400
]
108272284 (her6)
Transcription factors [BR:
ipu03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Hairy, Hairy/E(SPL)
108272284 (her6)
DNA repair and recombination proteins [BR:
ipu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
FA (Fanconi anemia) pathway
FA core complex binding factors
108272284 (her6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hairy_orange
HLH
bHLH_NCOA
Spectrin_1st_PEPL
Motif
Other DBs
NCBI-GeneID:
108272284
NCBI-ProteinID:
XP_017336094
Ensembl:
ENSIPUG00000022742
UniProt:
A0A2D0S020
LinkDB
All DBs
Position
11:complement(25517555..25519716)
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AA seq
270 aa
AA seq
DB search
MPADMMEKNSSSPVAATPASMNTVPDKPKTASEHRKSSKPIMEKRRRARINESLGQLKTL
ILDALKKDSSRHSKLEKADILEMTVKHLRNMQRAQMTAALNADPTVLGKYRAGFSECMNE
VTRFLSTCEGVNAEVRTRLLGHLANCMTQLNAMNYTAQAHAGPAPPPPTFGQPVVQIPGA
THVPVPVSVPACKSAPPSGASPSDASKVYGGFQLVPATDGQFAFLIPSGAFTPGGPVIPV
YASGAATPLSAAAASPREASLTSDSVWRPW
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgcctgctgatatgatggaaaagaactcgtcttccccggtggctgcgaccccggcgagc
atgaacaccgtcccggacaaacccaagacagcctccgagcacagaaagtcatccaaaccc
atcatggagaaaaggagacgagccaggatcaacgaaagcttgggtcagctcaaaaccctc
atcctggacgctctgaaaaaagacagctccagacactccaagctggagaaggcggatatc
ctggagatgaccgtgaagcacctcaggaacatgcagcgcgcgcagatgaccgccgctctg
aacgcggaccccaccgtgctcggcaagtaccgcgcgggcttcagcgagtgcatgaacgag
gtgacgcgttttctgtccacgtgcgagggcgtgaacgccgaggtgcgcacgcggctgctc
ggacacctggccaactgcatgacccagctgaacgcgatgaactacacagcgcaggcgcac
gccggacccgcgccgcctcctccgaccttcggacagcccgtggtgcagatccccggcgcg
acgcacgtgcccgtgcccgtctcggtgccggcgtgtaagagcgcgcctccatccggcgcg
tcgccgtctgacgcttccaaggtgtacggcggcttccagctcgtcccggctacagacgga
cagtttgccttcttgatccccagcggcgcgttcacccccggcggccccgtgatcccggtg
tacgcgagcggcgcagccacgcccctctcagcagccgccgcgtctccgcgcgaggcctcg
ctcacttcagactctgtctggaggccttggtag
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integrated database retrieval system