Ictalurus punctatus (channel catfish): 108272525
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Entry
108272525 CDS
T04658
Symbol
ntn1a
Name
(RefSeq) netrin-1a isoform X2
KO
K06843
netrin 1
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ipu00536
]
108272525 (ntn1a)
Glycosaminoglycan binding proteins [BR:
ipu00536
]
Heparan sulfate / Heparin
Axon guidance molecules
108272525 (ntn1a)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Laminin_N
NTR
EGF_laminin
EGF_LMN_ATRN
BNR_6
Motif
Other DBs
NCBI-GeneID:
108272525
NCBI-ProteinID:
XP_017336459
Ensembl:
ENSIPUG00000003485
UniProt:
W5UHM1
LinkDB
All DBs
Position
12:complement(16581539..16651941)
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AA seq
604 aa
AA seq
DB search
MMIVDCAAVLLGVLLLTPLCRPSVEALASSSPPDPCYDENGQARRCIPDFVNAAFGREVR
ASSTCGQKTPSRYCLGTERGGGERSRECRMCDASDPKRRHPASHLTDLHNPHNLTCWQSE
NGIRYPQNVTLTLSLGKKFEVTYVSAQFCSIRPDSMAIFKSMDYGKTWVPFQYYSSQCRK
VYNKPNRAAITKQNEQEAVCTDAHQQQQPHHQQPVSGGLVAFSTLDGRPSAHDFDNSPVL
QDWVTATDIRITFSRLHGEERKAEAEDEDDSHFYAVSDLQVGGRCKCNGHASRCVRDRTG
ELVCECKHNTAGPECDRCKPFHYDRPWQRATAREANECVACNCNLHARRCRFNMELYKLS
GRKSGGVCLNCRHNTAGRHCHYCKEGYYRDMSKPITHRKACKACDCHPVGAAGKTCNQTT
GQCPCKDGVTGITCNRCAKGYQQSRSPIAPCIKIPSAPPTTTASITEQPADCDSYCKASK
GKLKINMKKYCKKDYAVQVHILKSDKAGEWWKFTVNIVSVYKQSESRIRRGDQLLWVRAK
DVACKCPKMKTGKKYLLLGNNEDAPGQSGMVADKGSLVIQWRDTWARRLRKFQQREKKGK
CKKP
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atgatgattgtggactgtgccgctgtgctgctcggtgtgctgctgctcacgccgctctgt
cggccctcggtggaagcactcgcgagctcgtcgccgccggacccgtgctacgacgaaaac
gggcaggcgcgccgctgcatcccggacttcgtgaacgctgcgttcggccgggaagtgcgc
gcgtccagcacatgtggccagaagacaccgagtcgctactgcttggggacggagagaggc
ggtggagagaggagccgcgagtgccgcatgtgtgacgcgtcagaccccaaaaggcgccat
ccggcttcgcacctcaccgacctgcacaaccctcacaaccttacgtgctggcagtccgag
aacggcatacggtaccctcagaacgtgacgctgacgctgtctctcggtaagaagttcgag
gtgacgtatgtgagcgcgcagttctgctcgatccgtccggactcgatggccattttcaag
tccatggactacggcaagacgtgggttccgttccagtactactcgagccagtgccggaaa
gtgtacaacaagccgaaccgggccgccatcaccaagcagaacgagcaggaggccgtgtgc
acggacgcgcaccagcagcagcaaccgcaccatcagcagccggtctcgggcggcctcgtg
gccttcagcacgctggacggtcggccgtctgctcacgacttcgacaactcacccgtgctc
caggactgggtcacggccacggacatccgcatcacgttcagccgcttgcacggtgaggag
cgcaaggccgaagcagaggacgaggatgactcgcacttctacgccgtgtccgacctgcag
gtaggcggccggtgcaagtgtaacgggcacgcctcgcgctgcgtgcgtgatcgcaccgga
gagctcgtgtgcgagtgcaagcacaacacggcggggcccgagtgcgacaggtgcaaaccg
ttccactacgaccgaccgtggcagcgcgcgaccgcgagagaggccaacgagtgtgtcgca
tgtaactgtaacctccacgcccggcgctgcaggtttaacatggagctgtataagctgtcg
gggaggaagagtggaggcgtctgtctcaactgtcgccacaacacggccggacgccactgt
cactactgtaaagagggctactacagagacatgagcaaacccatcactcacaggaaggcc
tgcaaagcgtgtgattgccatcctgttggtgccgcgggaaaaacgtgtaaccaaaccaca
ggccagtgtccgtgtaaagacggcgtgacgggtatcacgtgcaaccgctgcgctaagggc
taccagcagagccgctcccccatcgctccctgcatcaaaattccatctgcaccaccaacg
accacagcgagcatcacagagcagccggcagactgtgactcctactgcaaggcatccaaa
gggaagctgaaaatcaacatgaaaaagtactgcaagaaagattacgctgttcaggtgcac
atcctgaaatcggacaaggcgggcgagtggtggaaattcactgtgaacatcgtgtccgtg
tacaagcagagcgagagccgcatccgccgaggggaccagctgctgtgggtccgagccaag
gacgtggcctgtaagtgtcccaaaatgaaaacagggaagaaatacctgctgctggggaac
aacgaggacgcgccggggcagagcggcatggtggccgataaaggcagtctggtcatccag
tggagggacacgtgggcgcggagactgcgcaagttccagcagagagagaaaaaaggcaaa
tgcaagaagccttaa
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integrated database retrieval system
