Ictalurus punctatus (channel catfish): 108272552
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Entry
108272552 CDS
T04658
Symbol
irx1b
Name
(RefSeq) iroquois-class homeodomain protein IRX-1b
KO
K24889
iroquois-class homeodomain protein IRX
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ipu03000
]
108272552 (irx1b)
Transcription factors [BR:
ipu03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain TALE
108272552 (irx1b)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Homeobox_KN
Homeodomain
PFF1_TM
Motif
Other DBs
NCBI-GeneID:
108272552
NCBI-ProteinID:
XP_017336518
Ensembl:
ENSIPUG00000014804
UniProt:
A0A2D0S187
LinkDB
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Position
12:25992794..25997083
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AA seq
417 aa
AA seq
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MSFPQLGFPQVYGVERASPPRDGGSESGGGVTGSPASSAAALAPLLGVYAHPWSAHRYGA
FMPYSSAEAALLNHMGSQYELKENPGAHPAGFAVHTAPGFYPYSQYQYGDPARAKSATRE
TTSTLKAWLQEHKKNPYPTKGEKIMLAIVTKMTLTQVSTWFANARRRLKKENKVTWGRSA
EDVDGCGYDSDRDDDDESAHKHEREEEIDLETVDTDEAEEEVRKEPSDAKAHEQSETESE
SADTRALNSPAGSVAASKDASAGKSGSEDVSPGCQRPVNSKPKIWSLAETATSPDNCQKA
SSVSSAVTAHPAFLSTNGIYTCQIGKLNSWTGGAFLGAGPLIGVRSLMGVSPSSHYITSS
AQSESPTHSLSLSPQHNTDREHVQRTESPALPLRPSFPVIHDRSHHETAQRALKTVS
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgtctttccctcagctgggcttcccgcaggtgtacggggtggagagagcgtctccgccg
cgggatggcggctcggagagcggcggcggagtcaccgggagtcccgcgagctctgcggct
gcgctcgcgccgctgctcggcgtgtacgcgcatccgtggagcgcgcaccggtacggagcc
ttcatgccgtacagcagtgccgaagcagcgctcctcaaccacatgggctcccagtacgag
ttgaaggagaaccccggtgctcacccagccggattcgcggtgcacaccgcccccgggttc
tacccgtactcccagtaccagtacggagaccccgcacgggccaagagcgccacacgcgag
accaccagcacgctgaaagcctggcttcaggagcacaagaagaacccgtatcccactaaa
ggcgaaaagatcatgctggccatcgtgaccaaaatgaccctgacgcaggtgagcacgtgg
tttgccaacgcgcgccgccgcctcaagaaggagaacaaggtgacgtggggacgcagcgcc
gaggacgtagacggctgcggctacgacagcgaccgcgacgacgacgacgagagcgcgcac
aagcacgagcgcgaggaggagatcgacctggagaccgtggacaccgacgaggccgaagag
gaagtgcgcaaagagccgagcgacgccaaggcgcacgagcaaagtgaaacggagagcgaa
agcgcagacacgcgcgcgctaaacagccccgccggctccgtggccgcgagtaaagacgcg
agcgcggggaaaagcggctcagaggacgtttctccgggatgccagaggcctgtgaactcc
aaacccaaaatctggtcgctcgcggaaacagcaacgagtccagataactgccagaaagcg
agcagtgtgtcgtcggcagtcaccgcgcacccggcttttttatccactaacgggatttac
acgtgtcagatagggaagctgaacagctggactggaggcgcttttctcggtgcaggacct
ctaatcggtgtgcgctctttaatgggagtgagtccgagcagccattacataacctcaagc
gctcagagtgagagtcctacacacagcctcagcctcagtccacaacacaacaccgatcga
gaacatgttcagagaaccgaatctccagcacttcctctgaggccatcatttccggtcatc
cacgacaggtctcaccacgaaacagcacagcgagctctgaagactgtttcctga
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