Ictalurus punctatus (channel catfish): 108272569
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Entry
108272569 CDS
T04658
Symbol
col28a1a
Name
(RefSeq) collagen, type XXVIII, alpha 1a
KO
K23619
collagen type XXVIII alpha
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ipu01002
]
108272569 (col28a1a)
Peptidases and inhibitors [BR:
ipu01002
]
Peptidase inhibitors
Family I2: Kunitz - BPTI family
108272569 (col28a1a)
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Gene cluster
GFIT
Motif
Pfam:
Collagen
VWA
VWA_2
Kunitz_BPTI
DUF1194
Motif
Other DBs
NCBI-GeneID:
108272569
NCBI-ProteinID:
XP_017336537
UniProt:
A0A2D0S1C4
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Position
12:27372209..27395895
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AA seq
1142 aa
AA seq
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MRCSVVLCVLLLIFSGRGLSRQRRRQKVNNLVVQNEARALICPVEVAFLVDSSESTKALL
FEKQRSFVQRFSTWLSPLHVPGWHVRLRLAALQFSSTVSVEHNFRDWQDVDVFQSRVASM
AHIGHGTYLAYGISNATQLFTQETVGSSVRIALLMTNGVDHPRSPSAIAAAADAKNNNIR
VFVIGLTQDRQSDTRLRSIASPPPQQHVFSLEDAQLDERLFRELSTVVNTECPQPKPCPC
DKGERGPAGNPGKPGNPGQPGPPGLKGVRGEPGLNGRPGIEGREGRPGLRGEKGERGECG
AEGHKGDQGADGPPGPRGPPGEQGPIGGPGDYGPAGPAGPKGDRGPPGASGPPGDQGIGF
PGPKGDKGNQGRPGPIGPVGIGEPGPPGSPGPLGLPGNQGSPGEGLPGHKGDRGFEGPKG
APGPPGLGIKGEKGDPGAPGPQGLVGFPGDGIQGEKGEQGPVGPPGARGAAGVGIVGPKG
DQGFPGAPGLQGERGIGEPGPKGDPGSDGAPGIPGIPGEDGAVGSKGEMGLPGLQGPDGA
PGKGIPGERGDQGDRGVRGLPGSPGPAGPPGAKGEPGSPGMPGMPGPPGFGYPGPKGEPG
PVGPQGMVGEPGFGLAGPKGDRGPPGLVGPQGVKGEGYPGPQGLPGLPGVPGEMGPHGNG
LPGPKGDRGSPGVPGPSGPPGIGLLGPKGATGQPGPPGPPGPPGEGIQGPKGEPGFQGPP
GPRGLTGEGIAGEKGDRGLPGERGRKGDSGDFGAPGRTGAVGKPGEKGDPGLSREEVIQI
IREMCGCGRRCSERPLELVFIIDSSESVGPENFELTKDFVNALMDRVAVSREATRVGVVS
YSHVDMVVVSLQQLTDRTSIKAAVRQMPYLGEGTFTGRAIRSATRLFQASRHGVRKVALL
LTDGQADRRDTVQLEVAAEEAHAAGIEMFVIGVVNRSDSGYGQFQREMNSIASDPDEEHV
YLIHDFMNLPNLESEILSRICEPDDDSVLSSKGIIIFPAGKEPEAPAGFKTPSPETREID
DRKPSAFEEDVDDFTAGNRVSLQPPAVTVTRSRPPTNVLFDPDFSSPSQIQPPPFQSGAA
VDCTERLDPGPCRNYDVKWYYDPLANACAQFWYGGCQGNSNRFDTHQSCMDACVKRLKVL
SG
NT seq
3429 nt
NT seq
+upstream
nt +downstream
nt
atgcggtgtagtgtggtgctctgtgtcctgcttctgatcttctctgggagaggtctgagt
cgacagaggagacgacagaaagtaaacaatctagtcgtccaaaatgaagcaagagctctg
atttgtccggtggaggtggccttcctggtggacagctctgagagtaccaaggctcttctg
tttgagaagcagcgcagcttcgttcagcgtttcagcacctggttgtctccgctgcacgtt
cccggctggcacgtacgtctgcgtctggccgcgttgcagttcagcagcaccgtctcagtg
gaacacaacttccgtgactggcaggatgtggatgtctttcaaagccgtgtggcgtccatg
gcccacattggtcatggcacgtatttggcctacggcatctcgaacgccacgcaactcttt
actcaggagacggtgggcagcagtgtgcgtatcgccctgttgatgacgaacggagtggat
cacccacgcagcccgagtgccatcgctgctgccgcagacgccaaaaacaacaacattcga
gtgttcgtcattggcctgacgcaagacaggcagagtgataccaggctgaggtccatcgcc
agccctccaccacagcagcacgtgttcagccttgaggatgctcagctggacgagaggctt
ttcagagagttgagcacagttgttaacacagagtgtccacagcccaagccctgtccgtgt
gataaaggagaaaggggtcctgcaggaaacccgggtaaaccaggaaacccaggacaacct
ggccctcctggtctcaaaggagtcaggggggaacccggcttgaacggacgaccaggaata
gaaggccgtgagggaagaccaggactgagaggggaaaagggtgagagaggagagtgcgga
gcagaagggcataaaggagatcaaggtgcagatggacccccgggacctcgtggacctcca
ggagagcagggtcccattggtggtcctggagattacggtccagcgggtcctgctggacct
aaaggtgaccgaggacctcctggagcttctggtcctcccggagaccagggaattggattt
cctggtccaaagggagacaaggggaaccagggcagaccgggccctattggacctgttggg
attggagagccaggaccaccaggatcaccgggaccactaggactgccaggcaaccaaggt
tctccaggcgagggtttaccaggacacaagggggacagaggctttgagggtccaaaaggt
gcacctggacctccagggttaggcatcaaaggtgaaaagggggatcctggagctccagga
ccacagggactggttggatttcctggagatggaattcagggagaaaagggtgaacaaggc
ccagtagggccaccgggcgctagaggagctgctggtgtgggcattgtaggcccaaagggg
gatcagggcttccctggtgcacctggacttcaaggagaaagaggcatcggagaacctgga
ccaaaaggggacccaggatcagatggtgctccgggaattcctggcatcccaggagaagat
ggagctgtgggatccaagggtgagatgggtttaccaggtctgcaaggtcctgatggtgca
ccaggaaaaggcattccaggagaaaggggcgatcagggtgaccgaggggttcgtggtctt
ccaggatctccaggacctgcagggccgccaggggcgaagggtgaacctggtagtcccggg
atgccggggatgcctgggccgccagggtttggatatcctggtccaaagggtgagcctggg
cctgtgggtcctcagggcatggtcggagagccaggattcggacttgcagggccaaagggt
gacagaggaccacctggactggtgggaccacaaggggtaaagggagaaggttaccctggg
cctcagggacttcctggattgcctggagtaccaggagaaatgggaccacatggaaacgga
ctaccaggacctaagggggacagaggctcccctggtgttcctgggccatctgggccccct
ggaataggacttttgggaccaaagggtgcgaccggtcaaccaggccctcctgggcctcca
ggtccacctggtgagggcattcagggcccaaagggagagccaggcttccagggaccacca
ggccccagaggtctcacaggagaaggcattgcaggagagaagggggacagaggtctgcct
ggtgagcgcggcagaaaaggagacagtggagatttcggagcacctgggagaacaggagca
gtgggaaaacctggtgagaaaggagatcctggcctctcgagagaagaagtgatccaaata
atcagggaaatgtgtggttgtggtcggaggtgcagcgagagacccctggagctcgttttc
ataatcgacagctccgagagcgtcggtcccgagaactttgagcttacgaaggactttgtg
aacgctctgatggaccgtgtggcagtgagccgcgaggctacacgtgtgggagttgtgtcg
tacagtcacgtcgacatggtggtggtcagccttcagcagctgaccgaccgcaccagcatt
aaagccgctgtacgtcagatgccctatctgggggagggtacttttacgggacgtgctatc
cgcagtgccacgcggttgttccaggcctcgcgccatggtgtgaggaaggtggctctgttg
ctgacggacggacaagcggaccgacgggatacggtgcagttggaggttgccgcagaagaa
gcgcacgctgctgggatagagatgttcgtaatcggcgtagtgaatcgcagcgattcaggt
tacggccagtttcagagagagatgaattccatcgcttcagatccggatgaagagcacgtc
taccttatccacgacttcatgaacttgcccaacttggagagtgagatactgagtcggatc
tgtgagccggacgatgactcggtgctcagctcaaaagggatcatcattttcccagctggc
aaagagccggaagctccagcggggtttaagactccctctccagagacacgtgaaatcgac
gacaggaagccgtcagcgttcgaagaggatgtggatgattttacagcagggaacagagtg
agtctccagcctcctgccgtgactgtgacgagatctcggcctcccacaaacgtcctgttt
gaccctgacttcagctctccttcacagattcaacctccaccgttccagtctggagcagct
gtagactgtacggagcgtctcgaccccgggccgtgcaggaactacgatgtgaagtggtac
tacgatcctttagctaacgcctgcgcccagttctggtatggaggttgccaaggcaacagc
aaccgcttcgacacacaccagagctgcatggacgcttgtgtgaaaagattaaaagtttta
tctggttga
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